View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_high_5 (Length: 316)
Name: NF6457_high_5
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 29285475 - 29285189
Alignment:
| Q |
18 |
acatggactactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatttagttacaagtactcatccaa |
117 |
Q |
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| T |
29285475 |
acatggactactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatt--gttacaagtactcatccaa |
29285378 |
T |
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| Q |
118 |
caaacttggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285377 |
caaacttggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagt |
29285278 |
T |
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| Q |
218 |
gctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgccatattct |
306 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29285277 |
gctgcattatataagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgccattttct |
29285189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 35233382 - 35233099
Alignment:
| Q |
18 |
acatggactactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatttagttacaagtactcatccaa |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
35233382 |
acatggactactagactaccgctccacttccatctccttcaattctgttccatttttcaatttaattttggaaagcattcagttacaattactcatccaa |
35233283 |
T |
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| Q |
118 |
caaacttggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||| ||||||| | |
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| T |
35233282 |
caaacttggacagaatagctaatgaccaaccataaaataagtgtctttatattgaaatgttgtgaaggaaaacggaagcaccaacaaatttatgaaacgc |
35233183 |
T |
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| Q |
218 |
gctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgccat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
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| T |
35233182 |
gctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacaaaaaatttcatcgccat |
35233099 |
T |
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