View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6457_low_1 (Length: 498)

Name: NF6457_low_1
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6457_low_1
NF6457_low_1
[»] chr2 (1 HSPs)
chr2 (11-488)||(14784941-14785421)
[»] chr7 (5 HSPs)
chr7 (11-481)||(48898569-48899049)
chr7 (111-226)||(34184079-34184194)
chr7 (111-226)||(34204668-34204783)
chr7 (287-349)||(34184264-34184326)
chr7 (287-349)||(34204853-34204915)
[»] chr5 (3 HSPs)
chr5 (128-488)||(31116304-31116673)
chr5 (11-353)||(38061701-38062053)
chr5 (12-65)||(31116209-31116262)
[»] chr3 (8 HSPs)
chr3 (11-54)||(25661726-25661769)
chr3 (11-54)||(25668131-25668174)
chr3 (11-54)||(25674536-25674579)
chr3 (11-54)||(25681210-25681253)
chr3 (11-54)||(25689514-25689557)
chr3 (126-226)||(25660770-25660870)
chr3 (126-226)||(25667175-25667275)
chr3 (126-226)||(25673580-25673680)


Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 14785421 - 14784941
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 109  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||     
T  14785421 cataggcactttgaattatgaaatccctagtgttggttcctccctagccaatattttcatatccatttgtttctatacgtgtagggatagcaagaacctg 14785322  T
Q  110 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  14785321 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttcttaggaggttaccacatccctcgcatatagagttgtgtcaatacta 14785222  T
Q  210 gtttgattagtgatggaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatattttgctgaaatt 309  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14785221 gtttgatcagtgatggaagttccagtagaagtttatttatccatccaaaaattaatattgttatcattgctcagctaccacacaatattttgctgaaatt 14785122  T
Q  310 gatcccagatacctgttaaagctttccacaaag--gagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataa 407  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14785121 gatcccagatacctgttaaagctttccacaaaggagagaatcatatgattgagaatctatggtttctctaagatctttattactcccacacttactataa 14785022  T
Q  408 agaatcttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatga 488  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14785021 agaaccttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcatcattcatctgatga 14784941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 481
Target Start/End: Original strand, 48898569 - 48899049
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 109  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |||   ||||  || ||| |||||| ||| |||||||||||||     
T  48898569 catagacactttgaattgtgaaatccctagtgttggttcctccccaaccaatattgtcaagtccatcagtgtctttaggtgcagggatagcaagaacctg 48898668  T
Q  110 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 209  Q
    ||||||||| ||| |  ||||||||||||||||||| ||| ||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||| ||    
T  48898669 taaagcaaaggtagacggtaagttagaagtaaggaaattaaaatcccactctccttagggggttaccacgtccctcacatggagagttgtgtcaataata 48898768  T
Q  210 gtttgattagtgatgga---------agttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatatttt 300  Q
     |||||||||| |||||         ||||||||||| ||   ||||||||| ||||||||||||||| ||||||| || || |  ||||||||||||||    
T  48898769 ttttgattagtaatggacataagagaagttccactaggagcccatttatccatccaaaaattaatattattaccatcgcccaactgccacacaatatttt 48898868  T
Q  301 gctgaaattgatcccagatacctgttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacactt 400  Q
    | |||||||| |||||   |||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||||| |||||| ||||    
T  48898869 gttgaaattgttcccaataacctgttaaagctttccataaaggagaatcatatgatttagaatctatggctaccctaagatctttattcctcccatactt 48898968  T
Q  401 actataaagaatcttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcat 481  Q
    |||||| |||| ||| ||||| ||||||| | | ||||| || | |||||||| ||||||| |||||||||||||||||||    
T  48898969 actatagagaaccttacaccataggtcattaggcttggtgattagattccaaaacatcttcataagaaaagcgtcattcat 48899049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 34184079 - 34184194
Alignment:
Q  111 aaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactag 210  Q
    |||||||| ||| || |||||||||||||||  || |||||||| || |||  ||| | ||||||||| ||| | ||||| || |||||||||| |  |     
T  34184079 aaagcaaaggtaaatggtaagttagaagtaataaaattataatctcaatctcttgaaggggttaccacatccttaacatagagggttgtgtcaacataat 34184178  T
Q  211 tttgattagtgatgga 226  Q
    ||||||||||||||||    
T  34184179 tttgattagtgatgga 34184194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 34204668 - 34204783
Alignment:
Q  111 aaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactag 210  Q
    |||||||| ||| || |||||||||||||||  || |||||||| || |||  ||| | ||||||||| ||| | ||||| || |||||||||| |  |     
T  34204668 aaagcaaaggtaaatggtaagttagaagtaataaaattataatctcaatctcttgaaggggttaccacatccttaacatagagggttgtgtcaacataat 34204767  T
Q  211 tttgattagtgatgga 226  Q
    ||||||||||||||||    
T  34204768 tttgattagtgatgga 34204783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 34184264 - 34184326
Alignment:
Q  287 ccacacaatattttgctgaaattgatcccagatacctgttaaagctttccacaaaggagaatc 349  Q
    ||||||||||||||||||||| |  ||||| || |||  ||| ||||||||||||||||||||    
T  34184264 ccacacaatattttgctgaaaattttcccaaatgcctaataatgctttccacaaaggagaatc 34184326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 34204853 - 34204915
Alignment:
Q  287 ccacacaatattttgctgaaattgatcccagatacctgttaaagctttccacaaaggagaatc 349  Q
    ||||||||||||||||||||| |  ||||| || |||  ||| ||||||||||||||||||||    
T  34204853 ccacacaatattttgctgaaaattttcccaaatgcctaataatgctttccacaaaggagaatc 34204915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 128 - 488
Target Start/End: Original strand, 31116304 - 31116673
Alignment:
Q  128 taagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatg--- 224  Q
    ||||||||| |||||||| ||||| ||||||||| ||||| ||| |||||||||||||||||  ||||| |||| |||||| |||||||||||||||       
T  31116304 taagttagaggtaaggaaattatagtcccactctcctgagaaggctaccacgtccctcacatggagagtcgtgtaaatacttgtttgattagtgatgaac 31116403  T
Q  225 ------gaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatattttgctgaaattgatcccaga 318  Q
          ||||||||||| | ||   ||||||| | |||||| |||||||||||||||||||  |||  ||||||||||||||||| ||||| |||||| |    
T  31116404 ataagagaagttccactgggagcacatttatcgatccaaaagttaatattgttaccattgccaagctgccacacaatattttgcttaaattaatcccaaa 31116503  T
Q  319 tacctgttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataaagaatcttgca 418  Q
    ||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||| ||    
T  31116504 tacttgttaaagctttccacaaaggggaatcatatgatttagaatctatggttaccctaagatctttattcctcccatacttactataaagaagcttaca 31116603  T
Q  419 ccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatga 488  Q
    ||| ||||||||||| ||||| || | |||| ||||||||||| |||||||| |||| ||||| ||||||    
T  31116604 ccataggtcatcaagcttggtgatcagattcaaaagcatcttcataagaaaaacgtctttcatatgatga 31116673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 38062053 - 38061701
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 109  Q
    ||||| ||| || ||||||||||||||||||||||||||||||| |||||||||| |||   ||||  || ||| |||||| ||| |||| ||||||||     
T  38062053 catagacactttaaattgtgaaatccctagtgttggttcctccccaaccaatattgtcaagtccatcagtgtctttaggtgcagggatagaaagaacctg 38061954  T
Q  110 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 209  Q
    ||||||||| ||| |  ||||||||||||||||||| ||| ||||||||||| |||||| |||| ||||||| |||||||  |||||| |||||||| ||    
T  38061953 taaagcaaaggtagacggtaagttagaagtaaggaaattaaaatcccactctcctgagggggttgccacgtcactcacatggagagttatgtcaataata 38061854  T
Q  210 gtttgattagtgatg---------gaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatatttt 300  Q
    ||||||||||| |||         ||||||||||||| ||   |||||||||  |||||||||||||| ||||||| || || |  ||||||||||||||    
T  38061853 gtttgattagtaatggacataagagaagttccactaggagcccatttatccattcaaaaattaatattattaccatcgcccaactgccacacaatatttt 38061754  T
Q  301 gctgaaattgatcccagatacctgttaaagctttccacaaaggagaatcatat 353  Q
    |||||||| | ||||| |||| ||||||||||||||| |||||||||||||||    
T  38061753 gctgaaatcgttcccaaatacatgttaaagctttccataaaggagaatcatat 38061701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 31116209 - 31116262
Alignment:
Q  12 ataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatatt 65  Q
    |||||||| |||||||||||||||||||||||||||||| ||  ||||||||||    
T  31116209 ataggcactttgaattgtgaaatccctagtgttggttccaccgcaaccaatatt 31116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25661769 - 25661726
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 54  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25661769 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25661726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25668174 - 25668131
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 54  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25668174 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25668131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25674579 - 25674536
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 54  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25674579 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25681253 - 25681210
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 54  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25681253 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 25689557 - 25689514
Alignment:
Q  11 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 54  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25689557 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25689514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 25660870 - 25660770
Alignment:
Q  126 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 225  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25660870 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25660771  T
Q  226 a 226  Q
    |    
T  25660770 a 25660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 25667275 - 25667175
Alignment:
Q  126 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 225  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25667275 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25667176  T
Q  226 a 226  Q
    |    
T  25667175 a 25667175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 25673680 - 25673580
Alignment:
Q  126 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 225  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25673680 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25673581  T
Q  226 a 226  Q
    |    
T  25673580 a 25673580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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