View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_13 (Length: 249)
Name: NF6457_low_13
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 3456860 - 3457100
Alignment:
| Q |
9 |
ttatactcccaatgttgcattaaataagccaattgagatgaccctttatctgtataatttgtaagctccattaatctttgaaaatcagctatagctggtt |
108 |
Q |
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| T |
3456860 |
ttatactcccaatgttgcattaaataagccaattgagatgaccctttatctgtataatttgtaagctccattaatctttgaaaatcagctattgctggtt |
3456959 |
T |
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| Q |
109 |
cttctaagattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacat |
208 |
Q |
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| T |
3456960 |
cttctaagattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacat |
3457059 |
T |
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| Q |
209 |
tgaagataactcttcaatgtccatcatgtcttcaatacaat |
249 |
Q |
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| T |
3457060 |
tgaagataactcttcaatgtccatcatgtcttcaatacaat |
3457100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 3481214 - 3481359
Alignment:
| Q |
9 |
ttatactcccaatgttgcattaaataagccaattgagatgaccctttatctgtataatttgtaagctccattaatctttgaaaatcagctatagctggtt |
108 |
Q |
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| T |
3481214 |
ttatactcccaatgtttcacgagattagctaactgagaagaccctatatctgtataatctgtaagctccacaattctttgaaaatcagctataattggtt |
3481313 |
T |
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| Q |
109 |
cttctaagattgttacttcttccaacatatcttgatctcttcctgg |
154 |
Q |
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| T |
3481314 |
cctctaagactgttacttcttccaaaatattttgatccattcctgg |
3481359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 48693857 - 48693755
Alignment:
| Q |
111 |
tctaagattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacattg |
210 |
Q |
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|||| ||||| ||||||||| |||| ||||||||| ||||||| |||||||| ||||| || ||||||||||||| ||||| ||||||||||||||||| |
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| T |
48693857 |
tctatgattgatacttcttctaacacatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattg |
48693758 |
T |
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| Q |
211 |
aag |
213 |
Q |
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||| |
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| T |
48693757 |
aag |
48693755 |
T |
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