View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_14 (Length: 238)
Name: NF6457_low_14
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3457209 - 3457427
Alignment:
| Q |
1 |
tgcatctcaagaaatttttggtccaaatacttgtgaatcacctagaaaaacacaaaattaatacaaattttatgacttgcaaaaattaagttatgcaata |
100 |
Q |
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| T |
3457209 |
tgcatctcaagaaatttttggtccaaatacttgtgaatcacctagaaaaacacaaaattaatacaaattttatgacttgcaaaaattaagttatgcaata |
3457308 |
T |
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| Q |
101 |
cattaaaagaaaaccagtcttacatgttattgtgaaccatgatgagagtgaattgttgaaaaagcatgaacctttaagaatgaatagaattaaaacaagt |
200 |
Q |
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| T |
3457309 |
cattaaaagaaaaccagtcttacatgttattgtgaaccatgatgagagtgaattgttgaaaaagcatgaacctttaaaaatgaatagaattaaaacaagt |
3457408 |
T |
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| Q |
201 |
gaccaaaaaagacacagaa |
219 |
Q |
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| T |
3457409 |
gaccaaaaaagacacagaa |
3457427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 3481744 - 3481809
Alignment:
| Q |
97 |
aatacattaaaagaaaaccagtcttacatgttattgtgaaccatgatgagagtgaattgttgaaaa |
162 |
Q |
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| T |
3481744 |
aatacattaaaagcaaaccaatcttacatgttattctgaatcatcatgagagtgaattgttgaaaa |
3481809 |
T |
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