View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_2 (Length: 420)
Name: NF6457_low_2
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 47382887 - 47383292
Alignment:
| Q |
1 |
cagagagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgattttccccccataacattttcttcaccatttgtat |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47382887 |
cagacagccccaaacacgtacctaaaccactattttagcgaatcataattcttgtaaaacattgatttttcccccataacattttcttcaccatttgtat |
47382986 |
T |
|
| Q |
101 |
ataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcatttctcnnnnnnnn-acttgctttgaataaaatagcaa |
199 |
Q |
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| T |
47382987 |
ataaacatataattcatcaagcacttactcttttatttcaaaggttttgtactcatgtttcatttctctttttttttacttgctttgaataaaatagcaa |
47383086 |
T |
|
| Q |
200 |
tgttagtctaaaatcggtctaaaatctgactcttcaaactctatgattcaaaataccctgaatatataaaggaatcaatcgcaatcaaagtatcaaacaa |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383087 |
tgttagtctaaaattggtctaaaatctgactcttcaaactctatgactcaaaataccctgaatatataaaggaatcaatcgcaatcaaagtatcaaacaa |
47383186 |
T |
|
| Q |
300 |
tatttgtgagaatccaattgtgttcgggccttttgttggtttacttttggaaaaagaatagtataggtggtaattttgcagccaaatagaaccacatgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383187 |
tatttgtgagaatccaattgtgttcgggccttttgttggtttacttttggaaaaagaatagtataggtggtaattttgcagccaaatagaaccacatgtc |
47383286 |
T |
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| Q |
400 |
cctcct |
405 |
Q |
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|||||| |
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| T |
47383287 |
cctcct |
47383292 |
T |
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