View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_3 (Length: 377)
Name: NF6457_low_3
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 362
Target Start/End: Original strand, 31875904 - 31876262
Alignment:
| Q |
3 |
cacagatctaaccaattaatcttaggtgactcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttgtcttgtact |
102 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31875904 |
cacaaatctaaccaattaatcttaggtgactc--ccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttgtcttgtact |
31876001 |
T |
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| Q |
103 |
aggaaacccttagtttgaagaccgtctacatatatagccagttttatccgcacataacttcttgcagggtttattcatacctgcatcaacacaaggaagt |
202 |
Q |
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| T |
31876002 |
aggaaacccttagtttgaagaccgtctacatatatagccagttttatccgcacataacttcttgcagggtttattcatacctgcatcaacacaaggaagt |
31876101 |
T |
|
| Q |
203 |
ttatc-ttttttctggaatgcaacacacaaggggtccccacattgcacaaagttattgtggagtttataaagtttatacttatcctgcaaaattaaccaa |
301 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876102 |
ttatctttttttctggaatgcaacacacaaggggtccccacattgcacaaagttattgtggagtttataaagtttatacttatcctgcaaaattaaccaa |
31876201 |
T |
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| Q |
302 |
caaagatcagcatatagtactagttaattattagaatgtaattttatcaaacatgattaat |
362 |
Q |
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| T |
31876202 |
caaagatcagcatatagtactagttaattattagaatgtaattttatcaaacatgattaat |
31876262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 31936038 - 31936138
Alignment:
| Q |
268 |
ataaagtttatacttatcctgcaaaattaaccaacaaagatcagcatatagtactagttaattattag---aatgtaattttatcaaacatgattaatga |
364 |
Q |
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| T |
31936038 |
ataaagtttatccctaggctgcaaaattaaccaacaaagatcaacatatagtactaattaattattagattaatgtaattatgtcaaacatgattaatga |
31936137 |
T |
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| Q |
365 |
t |
365 |
Q |
| |
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| |
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| T |
31936138 |
t |
31936138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 886363 - 886196
Alignment:
| Q |
202 |
tttatcttttttctggaatgcaacacacaaggggtccccacattgcacaaa---gttattgtggagtttataaagtttatacttatcctgcaaaattaac |
298 |
Q |
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||||| ||||||||||| |||| |||||||||| |||| ||| |||||| ||| |||| ||||||||||||||| |||| ||||||||||||| |
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| T |
886363 |
tttattttttttctggactgcatcacacaagggcgtcccatatttcacaaatttgtttttgtcaggtttataaagtttatccttaggctgcaaaattaac |
886264 |
T |
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| Q |
299 |
caacaaagatcagcatatagtac----tagttaattattagaatgtaattttatcaaacatgattaat |
362 |
Q |
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| T |
886263 |
aaacaaagataagcatatagtactaattaattaattattagaatgtaaatatgtcaaacatgattaat |
886196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 31660348 - 31660251
Alignment:
| Q |
268 |
ataaagtttatacttatcctgcaaaattaaccaacaaagatcagcatatagtactagttaattattag---aatgtaattttatcaaacatgattaat |
362 |
Q |
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| T |
31660348 |
ataaagtttatccctaggctgcaaaattaaccaacaaagatcaacatatagtactaattaattattagattaatgtaattatgtcaaacatgattaat |
31660251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 31974363 - 31974460
Alignment:
| Q |
268 |
ataaagtttatacttatcctgcaaaattaaccaacaaagatcagcatatagtactagttaattattag---aatgtaattttatcaaacatgattaat |
362 |
Q |
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||||||||||| | || ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||||| |
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| T |
31974363 |
ataaagtttatccctaggctgcaaaattaaccaacaaagatcaatatatagtactaattaattattagattaatgtaattatgtcaaacatgattaat |
31974460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 31974199 - 31974298
Alignment:
| Q |
28 |
gtgactcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaat---gt-tgtcttgtactaggaaacccttagtttgaaga |
123 |
Q |
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|||| |||||||||||| | || ||| |||||||||||||||||||||||||| | |||||| || |||||| |||||||||||| ||||||| |||| |
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| T |
31974199 |
gtgaatcacccgaatgcgacctcagggcgctgtaaagtgcgatcagagctttcaatgggaatactgtctgtcttttactaggaaacctttagtttcaaga |
31974298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 31935906 - 31935942
Alignment:
| Q |
60 |
taaagtgcgatcagagctttctaagggaatgttgtct |
96 |
Q |
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| T |
31935906 |
taaagtgcgatcagagctttctatgggaatattgtct |
31935942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 31899807 - 31899704
Alignment:
| Q |
264 |
gtttataaagtttatacttatcctgcaaaattaaccaacaaagatc---agcatatagtactagttaattattaga--atgtaattttatcaaacatgat |
358 |
Q |
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||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||| |||||||| | ||||||||||| |
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| T |
31899807 |
gtttataaagtttatccttaggctgcaaaattaacaaacaaagatcagcagcatatagtactaattaattattagaatatgtaattatgtcaaacatgat |
31899708 |
T |
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| Q |
359 |
taat |
362 |
Q |
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|||| |
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| T |
31899707 |
taat |
31899704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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