View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_4 (Length: 356)
Name: NF6457_low_4
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 49756325 - 49756652
Alignment:
| Q |
18 |
tggcaaagagagtgggtgcacgatttttgctgacaagtacaagtgaggtgtacggtgatccacttcaacaccctcaagctgagacttactggggcaatgt |
117 |
Q |
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| T |
49756325 |
tggcaaagagagtgggtgcacgatttttgctgactagtacaagtgaggtgtacggtgatccacttcaacaccctcaagctgagacttactggggcaatgt |
49756424 |
T |
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| Q |
118 |
taatcctattggtaataataaagtttatttcattaaactctttcaaatcttagccttgattttaattttaattaagctatgttctattttattttatttg |
217 |
Q |
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| T |
49756425 |
taatcctattggtaataataaagtttatttcattaaactctttcaaatcttagccttgattttagttttaattaagctatgttctattttattttatttg |
49756524 |
T |
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| Q |
218 |
gatcccttttggtgatgtataggtgtaagaagttgttatgatgagggaaaacgtgttgctgagactttggctatggattaccacagaggagctggcattg |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49756525 |
gatcccttttggcgatgtataggtgtaagaagttgttatgatgagggaaaacgtgttgctgagactttggctatggattaccacagaggagctggcattg |
49756624 |
T |
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| Q |
318 |
aggtttgttggtttcacattatgatgat |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49756625 |
aggtttgttggtttcacattatgatgat |
49756652 |
T |
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