View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6457_low_9 (Length: 285)
Name: NF6457_low_9
Description: NF6457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6457_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 1423266 - 1423393
Alignment:
| Q |
32 |
aaatcaatccaaacaaattctaactaaagacaacccaatatcctcaagtatacacagagacatttcatcaaacagttaatatcttcaaataataaccaca |
131 |
Q |
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| T |
1423266 |
aaatcaatccaaacaaattctaactaaagacaacccaatatcctcaagtatacacagagacatttcatcgaacagttaatatcttcaaataataaccaca |
1423365 |
T |
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| Q |
132 |
atgacacagtccaagttttcactaatag |
159 |
Q |
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| T |
1423366 |
atgacacagtccaagtttccactaatag |
1423393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 1423460 - 1423508
Alignment:
| Q |
226 |
aaatataaagacagtgaagaaaagcaacaggttttgtggtataccttctt |
275 |
Q |
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| T |
1423460 |
aaatataaagacagtgaagaaaagcaacagg-tttgtggtataccttctt |
1423508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 1418597 - 1418629
Alignment:
| Q |
83 |
acacagagacatttcatcaaacagttaatatct |
115 |
Q |
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| T |
1418597 |
acacagagacatttcatcaaacagttaatatct |
1418629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 22796771 - 22796807
Alignment:
| Q |
11 |
tgctagtagataaactcaaagaaatcaatccaaacaa |
47 |
Q |
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| T |
22796771 |
tgctagtagataaactcaaataaatcaatccaaacaa |
22796807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 49916577 - 49916617
Alignment:
| Q |
10 |
gtgctagtagataaactcaaagaaatcaatccaaacaaatt |
50 |
Q |
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| T |
49916577 |
gtgctagtagataagttcaaataaatcaatccaaacaaatt |
49916617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 29045887 - 29045851
Alignment:
| Q |
11 |
tgctagtagataaactcaaagaaatcaatccaaacaa |
47 |
Q |
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| T |
29045887 |
tgctagtagataaactcaaataagtcaatccaaacaa |
29045851 |
T |
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