View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6458_high_1 (Length: 580)
Name: NF6458_high_1
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 27314108 - 27313547
Alignment:
| Q |
1 |
atgcatttgtgtttcccttgtttggtgtaacaaacttaatgattctataagtagaaaaataatttcccgcccccttttgtgtgtgacattgtattatgcn |
100 |
Q |
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| T |
27314108 |
atgcatttgtgtttcccttgtttggtgtaacaaacttaatgattctataagtagaaaaataatttcccgccccattttgtgtgtgacattgtattatgca |
27314009 |
T |
|
| Q |
101 |
nnnnnngatatagtttagaatatgcaataatcaaactttcctatcttcaattctctttcagagaggcatagtggagatagtgcataatggttgtgagttc |
200 |
Q |
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| T |
27314008 |
aaaaaagatatagtttagaatatgcaataatcaaactttcctatcttcaattctctttcagagaggcatagtggagatagtgcataatggttgtgagttc |
27313909 |
T |
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| Q |
201 |
tttaaatggttgatgagtaaagcaaactattacaaatatttttatttcttgtactttaagtgtaggcatgtggaaaaatgtaacaccttcatccacttac |
300 |
Q |
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| T |
27313908 |
tttaaatggttgatgagtaaagcaaactattacaaatatttttatttcttgtactttaagtgtaggcatgtggaaaaatgtaacaccttcatccacttac |
27313809 |
T |
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| Q |
301 |
aagccaagccataaagccctccaaatccttcattttccaaagctaatctatgctatataaattataaccaaagtattcatatgcattaatcaaatcagcc |
400 |
Q |
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| T |
27313808 |
aagccaagccataaagccctccaaatccttcattttccaaagctaatctatgctatataaattataaccaaagtattcatatgcattaatcaaatcaacc |
27313709 |
T |
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| Q |
401 |
acattccttacaatatacagccaacaaacagg-nnnnnnnntatggacaaattcttcttggtttctttactcggtttgcttatagtggcgaatggagttt |
499 |
Q |
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| T |
27313708 |
acattccttacaatatacagccaacaaacaggaaaaaaaaatatggacaaattcttcttggtttctttactcggtttgcttatagtggcgaatggagttt |
27313609 |
T |
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| Q |
500 |
caggaagcatgatgtgcgacaacaactttggcatgctagaagaactcaacaacctcgacaca |
561 |
Q |
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| T |
27313608 |
caggaagcatgatgtgcgacaacaactttggcatgctagaagaactcaacaacctcgacaca |
27313547 |
T |
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