View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6458_high_11 (Length: 207)
Name: NF6458_high_11
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 11586723 - 11586548
Alignment:
| Q |
13 |
gagatgaaaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttacaggagaataaacaa |
112 |
Q |
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| T |
11586723 |
gagatgagaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttagaggagaataaacaa |
11586624 |
T |
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| Q |
113 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgtaactagaggctg |
188 |
Q |
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| T |
11586623 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgaaactagaggctg |
11586548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 11599309 - 11599134
Alignment:
| Q |
13 |
gagatgaaaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttacaggagaataaacaa |
112 |
Q |
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| T |
11599309 |
gagatgagaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttagaggagaataaacaa |
11599210 |
T |
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| Q |
113 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgtaactagaggctg |
188 |
Q |
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| T |
11599209 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgaaactagaggctg |
11599134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 11609808 - 11609633
Alignment:
| Q |
13 |
gagatgaaaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttacaggagaataaacaa |
112 |
Q |
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| T |
11609808 |
gagatgagaaagcctgatggaattataagtgacacatttgataaatcatggccatttattgccatattcaactcttgtgtgtttagaggagaataaacaa |
11609709 |
T |
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| Q |
113 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgtaactagaggctg |
188 |
Q |
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| T |
11609708 |
cataggatcccaaagggtctatgaaacattcttgaataatcttcacaccatctttgggaggtgaaactagaggctg |
11609633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 13369001 - 13369051
Alignment:
| Q |
99 |
aggagaataaacaacataggatcccaaagggtctatgaaacattcttgaat |
149 |
Q |
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| T |
13369001 |
aggagaaaacacaacataggatcccaaaggatctatgaagtattcttgaat |
13369051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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