View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6458_high_2 (Length: 493)
Name: NF6458_high_2
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 44847631 - 44847428
Alignment:
| Q |
17 |
atagtttcgctaacttcttctattcaaattatgcattttcgaagaagtgataactgagccatttgttttgccagtccaaatgtattctgatgctaatgaa |
116 |
Q |
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| T |
44847631 |
atagtttcgctaacttcttctattcaaattatgcattttcgaagaagtaataactgagccatttgttttgccagtccaaatgtattctgatgctaatgaa |
44847532 |
T |
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| Q |
117 |
tcaattacatgttttactttatgtatatataaaattaaaaaactaaagattcgtaccacaggcttccaagttgcatgctctttctaagttgagatagagt |
216 |
Q |
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| T |
44847531 |
tcaattacatgttttactttatgtatatataaaattaaaaaactaaagattcgtaccacaggcttccaagttgcatgctctttctaagttgagatagagt |
44847432 |
T |
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| Q |
217 |
ttta |
220 |
Q |
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|||| |
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| T |
44847431 |
ttta |
44847428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 267 - 433
Target Start/End: Complemental strand, 44847375 - 44847209
Alignment:
| Q |
267 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
366 |
Q |
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| T |
44847375 |
atatccattattagagatttaggataacatcagcaaggaagatgaaacgattaaaacaggttttagatttataccagattgacagaacgaggaatccgca |
44847276 |
T |
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| Q |
367 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
433 |
Q |
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| T |
44847275 |
acaatccaaccttgcgggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
44847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 44860199 - 44860140
Alignment:
| Q |
312 |
aacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
371 |
Q |
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| T |
44860199 |
aacaattaaaataggttttagatatataccagatttacagaacgaggaatccgcaacaat |
44860140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 44896259 - 44896161
Alignment:
| Q |
273 |
attattagagatttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat |
371 |
Q |
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| T |
44896259 |
attattagggatttaggatagcagcagcaaggaggatgcaaccattaaaacaagtgttagatatataccaaatttatagaacgaggaattcgcaacaat |
44896161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 44870959 - 44870887
Alignment:
| Q |
283 |
atttaggataacatcagcaaggaagatgaaacaattaaaacaggttttagatttataccagattgacagaacg |
355 |
Q |
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| T |
44870959 |
atttaggataacaatggcaaggaatatgcaacaattaaaacaggttttagatttataccagatttacaaaacg |
44870887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 44861250 - 44861167
Alignment:
| Q |
20 |
gtttcgctaacttcttctattcaaattatgcattttcgaagaagtgataactgagccatttgttttgccagtccaaatgtattc |
103 |
Q |
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| T |
44861250 |
gtttcactaatttcttccattcaaattatgcattttggaagttgtaataactgaagaagtttttttgccagtccaaatctattc |
44861167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 433
Target Start/End: Complemental strand, 44896128 - 44896078
Alignment:
| Q |
383 |
ggttgagttataccatacagtgacattgagtccatcctcattcgaatttag |
433 |
Q |
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| T |
44896128 |
ggttgacttgtaccatacagtgacgttgaatccattctcattcgaatttag |
44896078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 44871750 - 44871701
Alignment:
| Q |
82 |
ttttgccagtccaaatgtattctgatgctaatgaatcaattacatgtttt |
131 |
Q |
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| T |
44871750 |
ttttgccagtcaaaatctattcctatgctaatgaatcaagtacatgtttt |
44871701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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