View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6458_high_4 (Length: 399)
Name: NF6458_high_4
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_high_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 8525950 - 8526332
Alignment:
| Q |
19 |
gaatggctattgaacatgaagatgagctcaaggacgagaagaaccctcgcccccttgacgaggatgatatcgctctcctcaaaacctacgtaatcctctc |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8525950 |
gaatggctattgaccatgaagatgagctcaaggacgagaagaaccctcgcccccttgacgaggatgatatcgctctcctcaaaacctacgtaatcctctc |
8526049 |
T |
|
| Q |
119 |
tctcttaaaccctaatttcccaatttctctgttttaccttcaccgatctcgttttttgtaacaatcgattaatgttctactcgtgtctgctctattgtat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
8526050 |
tctcttaaaccctaatttcccaatttctctgttttaccttcaccgatctcgttttttgtaacaattgattaatgttctactcctgtctgctctattgtat |
8526149 |
T |
|
| Q |
219 |
gcttagtaatatcgaatttcaaccatgcttagtgtttattggaaaatttgttgattctggatctagggttagttaaaaatctg--nnnnnnnnngttggt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8526150 |
gcttagtaatatcgaatttcaaccatgcttagtgttttttggaaaatttgttgattctggatctagggttagttaaaaatctgtttttttttttgttggt |
8526249 |
T |
|
| Q |
317 |
tttaaaattttataacgttgaaggtgtaatcagaagaaagaaattagtatccttttgattgaccagcttttcagattttgatt |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
8526250 |
tttaaaattttacaacgttgaaggtgtaatcagaagaaagaaattagtatccttttgattgatccgcttttcagattttgatt |
8526332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 43054441 - 43054353
Alignment:
| Q |
20 |
aatggctattgaacatgaagatgagctcaaggacgagaagaaccctcg--cccccttgacgaggatgatatcgctctcctcaaaaccta |
106 |
Q |
| |
|
|||||||| |||||| ||||| || ||||| |||||||||||||||| |||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
43054441 |
aatggctaatgaacacgaagacgatctcaaagacgagaagaaccctccgcccccctcgatgaggatgacatcgctctcctcaaaaccta |
43054353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University