View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6458_high_5 (Length: 335)

Name: NF6458_high_5
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6458_high_5
NF6458_high_5
[»] chr8 (7 HSPs)
chr8 (16-274)||(28225870-28226128)
chr8 (37-300)||(8831400-8831660)
chr8 (84-283)||(27786994-27787193)
chr8 (121-265)||(29368849-29368993)
chr8 (78-241)||(399936-400098)
chr8 (78-208)||(36206621-36206748)
chr8 (294-327)||(28226170-28226203)
[»] chr3 (6 HSPs)
chr3 (84-283)||(51524581-51524780)
chr3 (121-263)||(3395826-3395968)
chr3 (111-235)||(31163328-31163446)
chr3 (102-185)||(35526775-35526857)
chr3 (100-153)||(21845203-21845255)
chr3 (86-126)||(31067031-31067071)
[»] chr4 (5 HSPs)
chr4 (86-287)||(19852185-19852380)
chr4 (86-263)||(37049758-37049935)
chr4 (86-287)||(16593993-16594188)
chr4 (86-223)||(16832361-16832504)
chr4 (123-261)||(12580041-12580179)
[»] chr7 (3 HSPs)
chr7 (108-260)||(26449735-26449887)
chr7 (100-265)||(33191035-33191194)
chr7 (105-246)||(19408065-19408206)
[»] chr1 (6 HSPs)
chr1 (104-263)||(13062174-13062333)
chr1 (18-283)||(17114873-17115135)
chr1 (108-250)||(49492080-49492222)
chr1 (108-174)||(50903683-50903749)
chr1 (104-164)||(39332181-39332241)
chr1 (78-138)||(41035199-41035259)
[»] chr6 (3 HSPs)
chr6 (86-263)||(25167601-25167778)
chr6 (90-263)||(10989749-10989919)
chr6 (100-148)||(29708949-29708997)
[»] chr2 (3 HSPs)
chr2 (99-188)||(37344443-37344532)
chr2 (165-261)||(30179898-30179994)
chr2 (78-147)||(18811903-18811971)
[»] chr5 (1 HSPs)
chr5 (100-210)||(15187892-15187996)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 28225870 - 28226128
Alignment:
Q  16 gttcaaagtatgaaatgttggcttcaacattgtcctcttccacggtaaggctcttgtcatgttggcttagagtgtcctccttcacctcttctacttcatc 115  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28225870 gttcaaagcatgaaatgttggcttcaacattgtcctcttccaccgtaagtctcttgtcatgttggcttagagtgtcctccttcacctcttctacttcatc 28225969  T
Q  116 cctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttt 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28225970 cctctaaaatttggaaagaatctacacactctttagggctgcagcagaatggagagatgatttggaagcaggagccatggtttggcatgaagggatcttt 28226069  T
Q  216 tcacttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcata 274  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28226070 tcacttgtcaaactagcatagttggtagttacatgttgcggcataggaacaatttcata 28226128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 37 - 300
Target Start/End: Original strand, 8831400 - 8831660
Alignment:
Q  37 cttcaacattgtcctcttccacggtaaggctcttgtcatgttggcttagagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaat 136  Q
    ||||||||||||||||||||||   ||  |||||||||||   ||| |||| ||||||| ||||||||||||||||||||| | |||||||| |||||||    
T  8831400 cttcaacattgtcctcttccacctcaattctcttgtcatg---gctgagagagtcctccatcacctcttctacttcatccccccaaaatttggaaagaat 8831496  T
Q  137 ctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatag 236  Q
    || |||||||||||||||||||||||||||||||||||||||||||| || |  || | |||||| |||||||| ||| |||||||| ||||||||||||    
T  8831497 ctgcacactctttagggctgcagcagaatggagagaggatttggaagtagaaatcaagatttggcttgaagggagcttgtcacttgtcaaactagcatag 8831596  T
Q  237 ttggtagttacatgttgcggcataggaacaatttcatacatagattgtgtggcagcgtgatgaa 300  Q
    |||||||||||| |||| ||||||| | || || ||||||||||| |||| ||||  |||||||    
T  8831597 ttggtagttacaggttgaggcatagtagcagttgcatacatagatggtgttgcaggatgatgaa 8831660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 84 - 283
Target Start/End: Original strand, 27786994 - 27787193
Alignment:
Q  84 agagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaag 183  Q
    ||||||||||||  ||||||||||||||||||||   |||||||| ||||||||| ||||||||| |||||||| |||||||||||||| | |||| ||     
T  27786994 agagtgtcctccaacacctcttctacttcatcccctcaaaatttggaaagaatctgcacactcttaagggctgctgcagaatggagagacggtttgaaaa 27787093  T
Q  184 caggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcatacatagattg 283  Q
    || ||  || | ||||||||||||||| ||| |||||||| |||||| |||||  |||||||||| | |||||||||| ||||||| || ||||||||||    
T  27787094 catgaaacaagatttggcatgaagggagcttgtcacttgtcaaactatcatagcaggtagttacaggctgcggcatagaaacaattgcagacatagattg 27787193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 29368993 - 29368849
Alignment:
Q  121 aaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttcact 220  Q
    |||||||| ||||||||| |||||| |||| ||||||||||||||| |  ||||||||||||||| || |||  ||||||| |||||||| ||| |||      
T  29368993 aaaatttggaaagaatctgcacactttttaaggctgcagcagaatgaaaggaggatttggaagcatgaaccaaagtttggcttgaagggagcttatcagc 29368894  T
Q  221 tgtgaaactagcatagttggtagttacatgttgcggcataggaac 265  Q
    ||| ||||||||||||||| |||| | | ||||| ||||||||||    
T  29368893 tgtcaaactagcatagttgctagtaataggttgcagcataggaac 29368849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 399936 - 400098
Alignment:
Q  78 tggcttagagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatt 177  Q
    ||||| |||||||||||  || | |||||||||||||||| | |||||||| |||||||||  ||||||||||||| | ||| ||||||||||| |||||    
T  399936 tggctgagagtgtcctctatcgcatcttctacttcatccccc-aaaatttggaaagaatctggacactctttagggttccagtagaatggagaggggatt 400034  T
Q  178 tggaagcaggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggt 241  Q
    |||||| |||| |||  ||||||| |||||| | | | || ||||| |||||||||||| ||||    
T  400035 tggaagaaggaaccaaagtttggcttgaaggtagcgtgtctcttgtcaaactagcatagctggt 400098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 36206621 - 36206748
Alignment:
Q  78 tggcttagagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatt 177  Q
    ||||| |||||||||||  || |||| ||||||||||||| | |||||||| ||||||||| ||||||||| ||||||||| | |||   |||||||| |    
T  36206621 tggctgagagtgtcctctatctcctcatctacttcatccccccaaaatttggaaagaatctgcacactcttaagggctgcaacggaa---agagaggagt 36206717  T
Q  178 tggaagcaggagccatggtttggcatgaagg 208  Q
    ||||||||||| | | |||||||| ||||||    
T  36206718 tggaagcaggaactaaggtttggcttgaagg 36206748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 28226170 - 28226203
Alignment:
Q  294 tgatgaaaggtattcatattcaactgtttctctg 327  Q
    ||||||||||||||||||||||||||||||||||    
T  28226170 tgatgaaaggtattcatattcaactgtttctctg 28226203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 283
Target Start/End: Complemental strand, 51524780 - 51524581
Alignment:
Q  84 agagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaag 183  Q
    |||||||| |||  |||||||||||||||||||| | |||||||| ||||||| | ||||||||| |||||||| |||||||||||||||| |||||||     
T  51524780 agagtgtcttccagcacctcttctacttcatccccccaaaatttggaaagaatttgcacactcttaagggctgcggcagaatggagagagggtttggaaa 51524681  T
Q  184 caggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcatacatagattg 283  Q
    || || ||| | |||||| |||||||| ||| |||||||| |||||| |||||  |||||||||| | |||||||||| |||| || || || |||||||    
T  51524680 catgaaccaagatttggcttgaagggagcttgtcacttgtcaaactatcatagcgggtagttacaggctgcggcatagaaacagttgcagacgtagattg 51524581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 3395826 - 3395968
Alignment:
Q  121 aaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttcact 220  Q
    |||||||| ||||||||| ||||||||||||||||| |||| ||||||  ||||||||||| | |||| |||   |||||| |||||||| |||   | |    
T  3395826 aaaatttggaaagaatctgcacactctttagggctgtagcaaaatggaaggaggatttggatgtaggaaccaacatttggcttgaagggagcttgctatt 3395925  T
Q  221 tgtgaaactagcatagttggtagttacatgttgcggcatagga 263  Q
    ||| |||||||||||| | ||||||| |  |||||| ||||||    
T  3395926 tgtcaaactagcatagctagtagttatagcttgcggtatagga 3395968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 31163328 - 31163446
Alignment:
Q  111 tcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaaggga 210  Q
    ||||||||||| |||||  ||||||||| |||||||||||||| |||||||||| |      || ||| ||||||||| ||| |||||||  ||||||||    
T  31163328 tcatccctctagaatttagaaagaatctccacactctttagggatgcagcagaaag------gggtttagaagcaggaaccaaggtttggtttgaaggga 31163421  T
Q  211 tcttttcacttgtgaaactagcata 235  Q
     ||| |||||||| |||||||||||    
T  31163422 gcttgtcacttgtcaaactagcata 31163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 35526775 - 35526857
Alignment:
Q  102 tcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagca 185  Q
    |||||||| ||||||| | |||||||  ||||||||| ||||||||||| ||||||| |||||||||  |||||||||||||||    
T  35526775 tcttctacctcatccccc-aaaatttagaaagaatctgcacactctttaaggctgcaacagaatggaaggaggatttggaagca 35526857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 21845203 - 21845255
Alignment:
Q  100 cctcttctacttcatccctctaaaatttgaaaagaatctacacactctttaggg 153  Q
    |||||||||| ||||||| | |||||||| ||||||||| ||||||||||||||    
T  21845203 cctcttctacctcatccccc-aaaatttggaaagaatctgcacactctttaggg 21845255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 31067071 - 31067031
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatt 126  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  31067071 agtgtcctccatcacctcttctacttcatccccccaaaatt 31067031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 86 - 287
Target Start/End: Complemental strand, 19852380 - 19852185
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagca 185  Q
    |||||||||| ||||||||||||| || |||| | |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||  |    
T  19852380 agtgtcctccatcacctcttctacatcttccccccaaaatttggaaagaatttgcacactctttagggctgcagcagaatggagagaggatttgaaaata 19852281  T
Q  186 ggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcatacatagattgtg 285  Q
    |||       |||||| |||||||  ||| |||||||| |||||||||||  ||||||||||| |||| ||||||||| |  || |||||||||||||||    
T  19852280 gga------atttggcttgaagggtgcttgtcacttgtcaaactagcataactggtagttacaggttgaggcataggagcggttgcatacatagattgtg 19852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 37049935 - 37049758
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagca 185  Q
    |||||||||| ||||||||||||| || |||| | |||||||| ||||||| | ||||||||||||||| ||||||||||| |  |||||||||||||||    
T  37049935 agtgtcctccatcacctcttctacctcttccccccaaaatttggaaagaatttgcacactctttagggcagcagcagaatgaaaggaggatttggaagca 37049836  T
Q  186 ggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcatagga 263  Q
    ||| ||| | |||||| |||||||| ||| |||  ||| |||||||||||| | ||||||| | |||| |||||||||    
T  37049835 ggaaccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 37049758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 287
Target Start/End: Original strand, 16593993 - 16594188
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagca 185  Q
    |||||||||| |||||||||||||||| |||| | |||||||| ||| ||| | ||||||||||| |||||||  |||||| |||||||||||| ||  |    
T  16593993 agtgtcctccatcacctcttctacttcttccccccaaaatttggaaataatttgcacactctttatggctgcattagaatgtagagaggatttgaaaata 16594092  T
Q  186 ggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcatacatagattgtg 285  Q
    |||       |||||| ||| |||  ||| |||||||| |||||||||||  ||||| ||||| |||| ||||||||| |  || |||||||||||||||    
T  16594093 gga------atttggcttgatgggtgcttgtcacttgtcaaactagcataactggtaattacaggttgaggcataggagcggttgcatacatagattgtg 16594186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 16832361 - 16832504
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaa----tc---tacacactctttagggctgcagcagaatggagagaggattt 178  Q
    |||||||| | ||||||||||||||||||||| | |||||||||||| ||    ||   |||||||||||||||||||||||||||||||||| | ||||    
T  16832361 agtgtccttcatcacctcttctacttcatccccc-aaaatttgaaaaaaaatcttcacttacacactctttagggctgcagcagaatggagagcgaattt 16832459  T
Q  179 ggaagcaggagccatggtttggcatgaagggatcttttcacttgt 223  Q
    | ||||| ||  ||  ||||||| |||||||| ||| ||||||||    
T  16832460 gaaagcaagaatcaaagtttggcttgaagggagcttgtcacttgt 16832504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 12580041 - 12580179
Alignment:
Q  123 aatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttcacttg 222  Q
    ||||| || ||||| | ||||||| | || |||||||||||||||||||||| |||| | ||| || |||   |||||  |||||||| ||| |||||||    
T  12580041 aatttaaagagaatttgcacactcctaagcgctgcagcagaatggagagagggtttgaaggcatgaaccaaattttggtttgaagggagcttgtcacttg 12580140  T
Q  223 tgaaactagcatagttggtagttacatgttgcggcatag 261  Q
    | |||||| |||||| |||||||| | | ||||||||||    
T  12580141 tcaaactatcatagtaggtagttataggctgcggcatag 12580179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 26449735 - 26449887
Alignment:
Q  108 acttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaag 207  Q
    |||||||||| | |||||||| | ||||||| ||||||||| |||||||||||| |||||||||||| |||||| | |||| ||| | |||||  |||||    
T  26449735 acttcatccccccaaaatttggagagaatctgcacactcttaagggctgcagcaaaatggagagagggtttggaggtaggaaccaagttttggtttgaag 26449834  T
Q  208 ggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcata 260  Q
    ||| ||| |||||||| |||||| |||||| |||||||||| |||||||||||    
T  26449835 ggagcttgtcacttgtcaaactatcatagtaggtagttacaggttgcggcata 26449887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 33191194 - 33191035
Alignment:
Q  100 cctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttg 199  Q
    |||||||||| ||||||| | |||||||||||||||||| ||||||||||  |||||||||||||     ||||| ||||||||||||    |  ||||     
T  33191194 cctcttctacctcatccccccaaaatttgaaaagaatctgcacactctttttggctgcagcagaa-----agagg-tttggaagcagggataaatgttta 33191101  T
Q  200 gcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcataggaac 265  Q
    || |||||||| ||| ||||| || || |||||| | ||||| |||| | ||||||||||||||||    
T  33191100 gcttgaagggagcttgtcactagttaagctagcaaatttggtggttataggttgcggcataggaac 33191035  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 19408065 - 19408206
Alignment:
Q  105 tctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatg 204  Q
    ||||| ||||||| | |||||||| ||||||||| | |||| |||| |||| || |||||| ||  ||||||||||||  || | ||| | |||||| ||    
T  19408065 tctacctcatccccccaaaatttggaaagaatctgcgcactttttaaggctacaacagaattgaaggaggatttggaataagtaaccaagatttggcttg 19408164  T
Q  205 aagggatcttttcacttgtgaaactagcatagttggtagtta 246  Q
    |||||| ||| ||| |||| ||| |||||||| |||||||||    
T  19408165 aagggagcttgtcagttgtcaaattagcatagctggtagtta 19408206  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 263
Target Start/End: Original strand, 13062174 - 13062333
Alignment:
Q  104 ttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcat 203  Q
    |||||| ||||||  | |||||||| ||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||| || ||| | |||||| |    
T  13062174 ttctacctcatcctcccaaaatttggaaagaatctgcacactctttaaggctgcagcagaatggaaggaggatttggaagcaagaaccaagatttggctt 13062273  T
Q  204 gaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcatagga 263  Q
    ||||||| ||| |||  ||| ||| |||||||| ||||||||| | ||||||||||||||    
T  13062274 gaagggagcttgtcaactgtcaaattagcatagctggtagttataggttgcggcatagga 13062333  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 17114873 - 17115135
Alignment:
Q  18 tcaaagtatgaaatgttggcttcaacattgtcctcttccacggtaaggctcttgtcatgttggcttagagtgtcctccttcacctcttctacttcatccc 117  Q
    ||||||| ||| ||| |||||||| ||||||| ||||||||   ||| |||||||| ||   ||  ||||||| |  | |||||||||||||||||||||    
T  17114873 tcaaagtctgatatgatggcttcatcattgtcttcttccacctcaagtctcttgtcgtg---gccgagagtgtaccacatcacctcttctacttcatccc 17114969  T
Q  118 tctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttc 217  Q
       |||||||| ||||||||||||||||||| || | |||| || ||  |||||||| ||||||| || || ||| | |||||| ||||| || ||| ||    
T  17114970 ctcaaaatttggaaagaatctacacactcttaagagttgcaacataacagagagagggtttggaaccatgaaccaagatttggcttgaagagagcttgtc 17115069  T
Q  218 acttgtgaaactagcatagttggtagttacatgttgcggcataggaacaatttcatacatagattg 283  Q
    | |||| |||||||||||| ||| ||||||| ||||||| ||||||||| || ||||||| |||||    
T  17115070 atttgtcaaactagcatagctggcagttacaagttgcggtataggaacatttgcatacattgattg 17115135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 49492080 - 49492222
Alignment:
Q  108 acttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttggcatgaag 207  Q
    |||||||||| | |||||||| | |||||||||||||| || ||||||||| |||||| |||||||| |||||| |||||||||| | ||||   || ||    
T  49492080 acttcatccccccaaaatttggagagaatctacacacttttaagggctgcaacagaattgagagagggtttggaggcaggagccaagttttgttttggag 49492179  T
Q  208 ggatcttttcacttgtgaaactagcatagttggtagttacatg 250  Q
    ||| ||| |||||||| |||||| |||||||  ||||||||||    
T  49492180 ggagcttgtcacttgtcaaactatcatagttaatagttacatg 49492222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 50903683 - 50903749
Alignment:
Q  108 acttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagagg 174  Q
    |||||||||| | |||||||| | |||| || ||||||||| |||||||||||||||||||||||||    
T  50903683 acttcatccccccaaaatttggagagaacctgcacactcttaagggctgcagcagaatggagagagg 50903749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 39332241 - 39332181
Alignment:
Q  104 ttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaa 164  Q
    |||||| |||||||   |||||||| ||||||||| ||||||||||| |||||||||||||    
T  39332241 ttctacctcatccccacaaaatttggaaagaatctgcacactctttaaggctgcagcagaa 39332181  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 41035199 - 41035259
Alignment:
Q  78 tggcttagagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatct 138  Q
    ||||| ||||||||||||  |||||||||||||||||||| | |||||||| | |||||||    
T  41035199 tggctgagagtgtcctccaacacctcttctacttcatccccccaaaatttggatagaatct 41035259  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 263
Target Start/End: Complemental strand, 25167778 - 25167601
Alignment:
Q  86 agtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagca 185  Q
    |||||||||| ||||||||||||| || |||| | |||||||| ||||||| | |||||||||||||||  |||||||||| |  |||||||||||||||    
T  25167778 agtgtcctccatcacctcttctacctcttccccccaaaatttggaaagaatttgcacactctttagggcaacagcagaatgaaaggaggatttggaagca 25167679  T
Q  186 ggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcatagga 263  Q
    ||| ||| | |||| | |||||||| ||| |||  ||| |||||||||||| | ||||||| | |||| |||||||||    
T  25167678 ggaaccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcatagga 25167601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 10989919 - 10989749
Alignment:
Q  90 tcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggag 189  Q
    |||||| ||||||||||||  ||||||| | |||||||| |||||||||  |||||||| ||||||||| | |||   |||||||| ||||||||||||     
T  10989919 tcctccatcacctcttctaagtcatccccccaaaatttggaaagaatctgtacactcttaagggctgcaacggaa---agagaggagttggaagcaggaa 10989823  T
Q  190 ccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcatagga 263  Q
    |||  ||||||  |||||||| ||| ||| |||| ||||||||||||||||| |||  | |||| |||||||||    
T  10989822 ccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatagttggttgttgtaggttgtggcatagga 10989749  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 29708997 - 29708949
Alignment:
Q  100 cctcttctacttcatccctctaaaatttgaaaagaatctacacactctt 148  Q
    |||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  29708997 cctcttctacttcatccccccaaaatttggaaagaatctgcacactctt 29708949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 37344532 - 37344443
Alignment:
Q  99 acctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcagga 188  Q
    ||||||||||| ||||||| | |||||||| ||||||||| ||||||||| || || | || ||||||||  ||||||||||||||||||    
T  37344532 acctcttctacctcatccccccaaaatttggaaagaatctgcacactcttaagagcagtagtagaatggaaggaggatttggaagcagga 37344443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 30179994 - 30179898
Alignment:
Q  165 tggagagaggatttggaagcaggagccatggtttggcatgaagggatcttttcacttgtgaaactagcatagttggtagttacatgttgcggcatag 261  Q
    ||||||||||  |||||||||| | ||| | |||| | |||||||| ||| ||||||||  ||||||||||| ||||||||||| ||||||||||||    
T  30179994 tggagagagggattggaagcagaaaccaagatttgtcttgaagggagcttgtcacttgttcaactagcatagctggtagttacaagttgcggcatag 30179898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 18811903 - 18811971
Alignment:
Q  78 tggcttagagtgtcctccttcacctcttctacttcatccctctaaaatttgaaaagaatctacacactct 147  Q
    ||||| |||||||| |||  ||||||||||||||||| |||| |||||||| ||||||| | ||||||||    
T  18811903 tggctaagagtgtcttccaacacctcttctacttcat-cctccaaaatttggaaagaatttgcacactct 18811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 15187996 - 15187892
Alignment:
Q  100 cctcttctacttcatccctctaaaatttgaaaagaatctacacactctttagggctgcagcagaatggagagaggatttggaagcaggagccatggtttg 199  Q
    |||||||||| ||||||| | |||||||| ||||||||| |||||| ||  ||||||||||||||     || ||||||||||||||||  |||  ||||    
T  15187996 cctcttctacctcatccccc-aaaatttgcaaagaatctgcacacttttctgggctgcagcagaa-----aggggatttggaagcaggaatcataatttg 15187903  T
Q  200 gcatgaaggga 210  Q
    || ||||||||    
T  15187902 gcttgaaggga 15187892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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