View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6458_low_10 (Length: 263)

Name: NF6458_low_10
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6458_low_10
NF6458_low_10
[»] chr7 (5 HSPs)
chr7 (1-119)||(5984932-5985049)
chr7 (182-246)||(5985197-5985261)
chr7 (182-246)||(8541888-8541952)
chr7 (75-173)||(8541995-8542093)
chr7 (105-150)||(5985070-5985115)
[»] chr8 (4 HSPs)
chr8 (63-173)||(26947132-26947243)
chr8 (182-246)||(26947295-26947359)
chr8 (182-246)||(26949618-26949682)
chr8 (63-173)||(26949445-26949556)
[»] chr1 (1 HSPs)
chr1 (63-173)||(40286038-40286149)
[»] scaffold0373 (1 HSPs)
scaffold0373 (186-246)||(14991-15051)
[»] chr4 (1 HSPs)
chr4 (186-246)||(6825222-6825282)
[»] chr6 (1 HSPs)
chr6 (182-246)||(13465288-13465352)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 5984932 - 5985049
Alignment:
Q  1 aaaaggcatagtgatttttctatcacatgttagatataatgttacctttatgatggttactattagtattttggtagtagtgatagtttagagtgtagat 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |    
T  5984932 aaaaggcatagtgatttatctatcacatgtt-gatataatgttacctttttgatagttactgttagtattttggtagtagtgatagtttagagtgtagtt 5985030  T
Q  101 ggatagtgaaggaggcttt 119  Q
    ||||||||||| |||||||    
T  5985031 ggatagtgaagaaggcttt 5985049  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 5985197 - 5985261
Alignment:
Q  182 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5985197 aatgagtacatgcttgcctatttaaagtgtggatgtcatgttctagatagttctttctagattct 5985261  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 8541952 - 8541888
Alignment:
Q  182 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8541952 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctatatagttctttctagattct 8541888  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 8542093 - 8541995
Alignment:
Q  75 tagtagtgatagtttagagtgtagatggatagtgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttgaagcaagaatag 173  Q
    ||||||||||| || ||||||||| |||||||||||| |||||||||||||| |||||||| ||  ||||||||||| ||||| ||| |||||||||||    
T  8542093 tagtagtgatacttaagagtgtagttggatagtgaagaaggctttagttgatagttgaaatataatagtaagtagtgtgaggacttggagcaagaatag 8541995  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 5985070 - 5985115
Alignment:
Q  105 agtgaaggaggctttagttgatggttgaaatgtagaagtaagtagt 150  Q
    ||||||| |||||||||||||||||||| |||||| ||||| ||||    
T  5985070 agtgaagaaggctttagttgatggttgatatgtagtagtaactagt 5985115  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 26947132 - 26947243
Alignment:
Q  63 ttagtattttgg-tagtagtgatagtttagagtgtagatggatagtgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttg 161  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||| ||||||||||| ||||| |||    
T  26947132 ttagtattttgggtattagtgatagtttagagtgtagttggatagtgaagaaggctttagttgatagttgaaatatagtagtaagtagtgtgaggacttg 26947231  T
Q  162 aagcaagaatag 173  Q
     |||||||||||    
T  26947232 gagcaagaatag 26947243  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 26947295 - 26947359
Alignment:
Q  182 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26947295 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatatttctttctagattct 26947359  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 26949618 - 26949682
Alignment:
Q  182 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26949618 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttttagattct 26949682  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 26949445 - 26949556
Alignment:
Q  63 ttagtattttgg-tagtagtgatagtttagagtgtagatggatagtgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttg 161  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||| ||| ||||||||| | ||||| |||    
T  26949445 ttagtattttgggtagtagtgatagtttagagtgtagttggatagtaaagaaggctttagttgatagttgaaatatagtagtaagtagcgtgaggacttg 26949544  T
Q  162 aagcaagaatag 173  Q
     |||| ||||||    
T  26949545 gagcaggaatag 26949556  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 40286149 - 40286038
Alignment:
Q  63 ttagtattttggt-agtagtgatagtttagagtgtagatggatagtgaaggaggctttagttgatggttgaaatgtagaagtaagtagtgcgaggatttg 161  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||| ||| ||||||||||| ||||| |||    
T  40286149 ttagtattttgggcagtagtgatagtttagagtgtagttggatagtgaagaaggctttggttgatagttgaaatatagtagtaagtagtgtgaggacttg 40286050  T
Q  162 aagcaagaatag 173  Q
     |||||||||||    
T  40286049 gagcaagaatag 40286038  T

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Target: scaffold0373 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 14991 - 15051
Alignment:
Q  186 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14991 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattct 15051  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 6825282 - 6825222
Alignment:
Q  186 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6825282 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattct 6825222  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 13465288 - 13465352
Alignment:
Q  182 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattct 246  Q
    |||||||||||| |||||||||||||||||  || |||| |||||||   |||||||||||||||    
T  13465288 aatgagtacatgtttgcctatttatagtgtaaatatcatattctagaggcttctttctagattct 13465352  T

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