View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6458_low_11 (Length: 238)
Name: NF6458_low_11
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5159650 - 5159878
Alignment:
| Q |
1 |
ttttttattgattttacattttaaataattaacaaaaacaatgaaataagttgat----gtatatattgacgccattggaaaaactttaagatttttatg |
96 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159650 |
ttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgccattggaaaaactttaagatttttatg |
5159749 |
T |
|
| Q |
97 |
ataatgtcaatttttgtaaagatgacaggacatag----ttaattatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||| | | |||| |
|
|
| T |
5159750 |
ataatgtcaatttttgtaaagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaaca |
5159849 |
T |
|
| Q |
193 |
tgtttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
||||| |||||||| |||||||||||||| |
|
|
| T |
5159850 |
tgtttagtgctaaatttcctgagtgttta |
5159878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5195295 - 5195520
Alignment:
| Q |
1 |
ttttttattgattttacattttaaataattaacaaaaacaatgaaataagttgat----gtatatattgacgccattggaaaaacttt-aagatttttat |
95 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5195295 |
ttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttat |
5195394 |
T |
|
| Q |
96 |
gataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||| | | ||||||| |
|
|
| T |
5195395 |
gataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgt |
5195494 |
T |
|
| Q |
196 |
ttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
|| ||||||||||||| || |||||| |
|
|
| T |
5195495 |
ttagtgctaaacttccagattgttta |
5195520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5181897 - 5182126
Alignment:
| Q |
1 |
ttttttattgattttacattttaaataattaacaaaaacaatgaaataagttgat----gtatatattgacgccattggaaaaacttt-aagatttttat |
95 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5181897 |
ttttatattgattttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttat |
5181996 |
T |
|
| Q |
96 |
gataatgtcaatttttgtaaagatgacaggacatagttaa----ttatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataac |
191 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| | ||||||| ||||||| |
|
|
| T |
5181997 |
gataatgtcaatttttgtatagatgacaggacatagttaattaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataac |
5182096 |
T |
|
| Q |
192 |
atgtttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |
|
|
| T |
5182097 |
atgtttagtgctaaacttccagagtgttta |
5182126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 4842927 - 4842731
Alignment:
| Q |
29 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacag |
124 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgttaattttttgaaagatgaccg |
4842828 |
T |
|
| Q |
125 |
gacatagttaattatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4842827 |
gacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgttta |
4842731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 5172630 - 5172794
Alignment:
| Q |
57 |
tatatattgacgccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagatgacaggacatagttaattatgacaggattatgcaatt |
156 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtcaatttttgtaaagataactggacatagttaattatgacaggactatgcaatt |
5172729 |
T |
|
| Q |
157 |
tgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
|||||||||||| |||||| ||||||| | | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
5172730 |
tgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgttta |
5172794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 5213602 - 5213686
Alignment:
| Q |
137 |
tatgacaggattatgcaatttgaaggatttggaagaactagatatcaactataacatgtttggtgctaaacttcctgagtgttta |
221 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| | || ||||||| ||||||||| |
|
|
| T |
5213602 |
tatgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgttta |
5213686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University