View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6458_low_12 (Length: 232)
Name: NF6458_low_12
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 6283607 - 6283804
Alignment:
| Q |
14 |
atgaatgaaataaattctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatg |
113 |
Q |
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| T |
6283607 |
atgaatgaaataaattctcattatttgatccaagagaacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatg |
6283706 |
T |
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| Q |
114 |
ctatacaaatcctaagacaattagttataactaactggctagataacttgctacacaagttatctctatatatagaagaggttaagaagcttcaatgtct |
213 |
Q |
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| T |
6283707 |
ctatacaaattcttagacaattagttataactaactggctagataacttgctacacaagttatctc----tatagaagaggttaagaagcttcaatgtct |
6283802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 13757425 - 13757332
Alignment:
| Q |
14 |
atgaatgaaataaattctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttg |
107 |
Q |
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| T |
13757425 |
atgaatgaaatgaatttgcattacttgatcaaagagtagaatacacattatatagagttcatagaggtgtaggatagttattgtacaagtgttg |
13757332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 38644477 - 38644542
Alignment:
| Q |
45 |
aagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtat |
110 |
Q |
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| T |
38644477 |
aagagtacaatacaccttatatagagttcatggaggtgtaggatagttatggtacaaatgatgtat |
38644542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 39845124 - 39845243
Alignment:
| Q |
27 |
attctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatgctatacaaatcct |
126 |
Q |
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||||||||||||||||| |||||||| |||| ||| |||||| ||||| ||||||||||||||||| |||| |||| ||||| |||||| || || |
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| T |
39845124 |
attctcattatttgatcatagagtacattacagcttgtatataattcatgaaggtgtaggatagttatgataca--tgttctatattctatactaactct |
39845221 |
T |
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| Q |
127 |
aagacaattagttataactaac |
148 |
Q |
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|| ||| ||||||| ||||||| |
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| T |
39845222 |
aaaacagttagttacaactaac |
39845243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 1143963 - 1143905
Alignment:
| Q |
122 |
atcctaagacaattagttataactaactggctagataacttgctacacaagttatctct |
180 |
Q |
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| T |
1143963 |
atcctaatacagttagttataactaactagctagataacttgtggaacaagttatctct |
1143905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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