View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6458_low_6 (Length: 328)
Name: NF6458_low_6
Description: NF6458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6458_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 41760655 - 41760537
Alignment:
| Q |
205 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
304 |
Q |
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| T |
41760655 |
attagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttctccttgttcttcgtctatgaaaattatat |
41760556 |
T |
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| Q |
305 |
tttcaatattttcttcgac |
323 |
Q |
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| T |
41760555 |
tttcaatattttcttcgac |
41760537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 41760817 - 41760725
Alignment:
| Q |
46 |
aaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
138 |
Q |
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| T |
41760817 |
aaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 41795606 - 41795516
Alignment:
| Q |
46 |
aaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
136 |
Q |
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| T |
41795606 |
aaatgccgtctagcatcaattcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 41795456 - 41795385
Alignment:
| Q |
205 |
attagaatgtaatcaatttccgacaatttatctccctcgtcatcatgtgcatcaaatagttcaacttcttct |
276 |
Q |
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| T |
41795456 |
attagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttct |
41795385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
79 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
134 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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