View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_15 (Length: 290)
Name: NF6459_high_15
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 40505603 - 40505332
Alignment:
| Q |
1 |
ttctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaaatgc |
100 |
Q |
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| T |
40505603 |
ttctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaaatgc |
40505504 |
T |
|
| Q |
101 |
atattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggac-tgttattct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
40505503 |
atattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgttattct |
40505404 |
T |
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| Q |
200 |
cttttcatacattatgctaataattagtgtttgtttacatagaccgttagatcgataaaatcacggtggttc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
40505403 |
cttttcatacattatgctaataattagtgtttgtttacatagaccattagatcgataaaatcacggtagttc |
40505332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22138094 - 22137854
Alignment:
| Q |
1 |
ttctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaaatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
22138094 |
ttctcatagttcttttgttgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaaatgc |
22137995 |
T |
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| Q |
101 |
atattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgaaacaatttctgtcctcggac-tgttattct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
22137994 |
atattattgtaattgatggcttctcctgtttctattcctgttctattgcttcttccacttgagtccttgacacaatttctgtcctcggacttgttattct |
22137895 |
T |
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| Q |
200 |
cttttcatacattatgctaataattagtgtttgtttacatag |
241 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22137894 |
cttttcataca-tatgctaataattagtgtttgtttacatag |
22137854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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