View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_16 (Length: 274)
Name: NF6459_high_16
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6887161 - 6886900
Alignment:
| Q |
1 |
ttcaatggtatcacaatctggttaaactaaattgtatcagagtttaatcgagttaaaatactctttaaatttgcttacatttagtcttcgatgacaagtt |
100 |
Q |
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| T |
6887161 |
ttcaatggtatcacaatctggttaaactaaattgtatcagagtttaatcgagttaaaatactctttaaatttgcttacatttagtcttcgatgacaagtt |
6887062 |
T |
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| Q |
101 |
gattaggatgaccgttaatcaatatttgaaaaattagactgaattgatcggttcaactgatccactagaaatcaatgtttgcttacatttatttttcatt |
200 |
Q |
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| T |
6887061 |
gattaggatgatcgttaatcaatgtttgaaaaattagaccgaattgatcagttcaactgaaccactagaaatcaatgtttgcttacatttatttttcatt |
6886962 |
T |
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| Q |
201 |
tagttcgttgtgcttgaatcgattgaaccaattaaactataacttgaaggtctcacaggttc |
262 |
Q |
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| T |
6886961 |
tagttcgttgtgcttgaatcgattgaaccaattaaactataacttgaaggtctcacatgttc |
6886900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 6887285 - 6887222
Alignment:
| Q |
66 |
taaatttgcttacatttagtcttcgatgacaagttgattaggatgaccgttaatcaatatttga |
129 |
Q |
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| T |
6887285 |
taaatttgcttaaatttagtcttcgatgacaagttgattaggattgtcgttaatcaatgtttga |
6887222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 6887404 - 6887364
Alignment:
| Q |
64 |
tttaaatttgcttacatttagtcttcgatgacaagttgatt |
104 |
Q |
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| T |
6887404 |
tttaaatttggttacatttagtcttcgatgacaagttgatt |
6887364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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