View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_18 (Length: 257)
Name: NF6459_high_18
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 43090308 - 43090078
Alignment:
| Q |
11 |
catagggtggttcaagagtttgtttgggataaagaaagacagagataattcaaactcaaattcttcaagtaccaaatggaatccttctcttcctcatcct |
110 |
Q |
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| T |
43090308 |
cataaggtggttcaagagtttgtttgggataaagaaagacagagataattcaaactcaaattcttcaagtaccaaatggaatccttctcttcctcatcct |
43090209 |
T |
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| Q |
111 |
ccttctcaagatttctcaaagagagattcgagaggcttgtgtcataatccagctaccatacctcccaacatttcacctgcagaagctgcttgggttcaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090208 |
ccttctcaagatttctcaaagagagattcgagaggcttgtgtcataatccagctaccatacctcccaacatttcacctgcagaagctgcttgggttcaat |
43090109 |
T |
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| Q |
211 |
ccttctactcagaaactgagaaggagcaaaa |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43090108 |
ccttctactcagaaactgagaaggagcaaaa |
43090078 |
T |
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