View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_20 (Length: 251)
Name: NF6459_high_20
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5437161 - 5436921
Alignment:
| Q |
1 |
tacccgtcattccttattttgagataaatgagggtgtgtatttcagtggtagtattcattggttggcactttacaattactctcattctcgttatgaatg |
100 |
Q |
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| T |
5437161 |
tacccgtcattccttattttgagataaatgagggtgtgtatttcagtggtagtattcattggttggcactttacaattactctcattctctttatgaatg |
5437062 |
T |
|
| Q |
101 |
ggcggattttactattgaccaatttgcgat---tatttcacttaatctgagtacggagacatacaataagttgctgctacttaggggttttaatgaagtg |
197 |
Q |
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| T |
5437061 |
ggcgggtattactattgaccaatttgcgattattatttcacttaatctgagtacggagacatacaataagttgctgctacctaggggtttcaatgaagtg |
5436962 |
T |
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| Q |
198 |
acacgtgaagtgccaattcttcgtgtgctaaacaaccacct |
238 |
Q |
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| T |
5436961 |
acacgtgaagtgccaattcttcgtgtgctaaacaaccacct |
5436921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 554243 - 554437
Alignment:
| Q |
33 |
ggtgtgtatttcagtggtagtattcattggttggcactttacaattactctcattctcgttatgaatgggcggattttactattgaccaatttgcgatta |
132 |
Q |
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| T |
554243 |
ggtgtgtacttgagtggttgtattcattggttagcactttacaatta--ctcattctcgttataaatgggaggatattagtattggtcaaatttttatta |
554340 |
T |
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| Q |
133 |
tttcacttaatctgagtacggagacatacaataagttgctgctacttaggggttttaatgaagtgacacgtgaagtgccaattcttcgtgtgctaaa |
229 |
Q |
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| T |
554341 |
tttcgcttgatctgcgtacagagacatacactgagttgatgctaccctcgggtttgaatgaagtgccacgtgaagcaccaattcttcgtgtgttaaa |
554437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 19351287 - 19351247
Alignment:
| Q |
120 |
caatttgcgattatttcacttaatctgagtacggagacata |
160 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
19351287 |
caatttgtgattatttcacttgatctgggtacggagacata |
19351247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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