View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_26 (Length: 242)
Name: NF6459_high_26
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 47157181 - 47156955
Alignment:
| Q |
16 |
atcagaagacaacaccatgtactggcccaagcccaccaccagcagcccattgaatactcatcccgtgctacatgtgaacaatcctttggaaaatttcaat |
115 |
Q |
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| T |
47157181 |
atcagaagacaacaccatgtactggcccaagcccaccaccaccagcccattgaatactcatcccgtgctacatgtgaacaatcctttggaaaatttcaat |
47157082 |
T |
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| Q |
116 |
gacaaacaagtgaattaatttctcattacatttctttgagnnnnnnntatcacattctgtttgatattttgtagaatttacctctcctttgctgtgaggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47157081 |
gacaaacaagtgaattaatttctcattacatttctttgagaaaaaaatatcacattctgtttgatattttgtagaatttacctctcctttgctgtgaggt |
47156982 |
T |
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| Q |
216 |
tggggcagcagagaatagacgggtcct |
242 |
Q |
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| T |
47156981 |
tggggcagcagagaatagacgggtcct |
47156955 |
T |
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