View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6459_high_28 (Length: 239)
Name: NF6459_high_28
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_28 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32657702 - 32657923
Alignment:
| Q |
18 |
cccactacaacatatataaaatcatacgctgcacttttataagtaaatctcatctctattactttgaaaatttgcgatgtgtgactactagatcattgtt |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32657702 |
cccactacaatatatataaaatcatacgctgcacttttataagtaaatctcatctctattgctttgaaaatttgcgatgtgggactactagatcattgtt |
32657801 |
T |
|
| Q |
118 |
caacacaatttgcttgaactaaagcatctggatcactcttcaaaccatttcatccaatggattccttcgtctaaagatcaatcacatgtaccaaggacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32657802 |
caacacaatttgcttgaactaaagcatctggatcactcttcaaaccatttcatccaatggattccttcgtctaaagatcaatcacatgtaccaaggacca |
32657901 |
T |
|
| Q |
218 |
acaataaaacatcttaaaacat |
239 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
32657902 |
accataaaacatcttaaaacat |
32657923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 32655481 - 32655545
Alignment:
| Q |
18 |
cccactacaacatatataaaatcatacgctgcacttttataagtaaatctcatctctattacttt |
82 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
32655481 |
cccactacaatatataccaattcatacgctgcacttttataggtaaatttcatctctattgcttt |
32655545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 32656751 - 32656803
Alignment:
| Q |
166 |
ttcatccaatggattccttcgtctaaagatcaatcacatgtaccaaggaccaa |
218 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32656751 |
ttcatcaaatggattacttcgtctaaagatcaatcaattgtactaaggaccaa |
32656803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University