View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_30 (Length: 238)
Name: NF6459_high_30
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 32888269 - 32888487
Alignment:
| Q |
17 |
aatgttcaagatataaagtgttacacatccactaaatggatgtattcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttcca |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32888269 |
aatgttcaagatataaagtggtacacatccactaaatggatgtattcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttcca |
32888368 |
T |
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| Q |
117 |
gaaaagaaatagttccaaactnnnnnnnngcatatataataagcataatcgaccaaaaccgtttaacttttaatcaaactgaagttttcattcttcttct |
216 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32888369 |
gaaaacaaatagttccaaactaaaaaaaagcatatataataagcataatcgaccaaaaccgtttaacttttaattaaactgaagttttcattcttcttct |
32888468 |
T |
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| Q |
217 |
ctttaaacaaattatgtat |
235 |
Q |
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||||||| ||||||||||| |
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| T |
32888469 |
ctttaaataaattatgtat |
32888487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 32883134 - 32883330
Alignment:
| Q |
17 |
aatgttcaagatataaagtgttacacatccactaaatggatgtattcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttcca |
116 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
32883134 |
aatgttcaagatataaagtggtacacgtccactaaatggatgtattcgtttgctatttttatctggttctaaaaatctaaaaaagattgtatattttcca |
32883233 |
T |
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| Q |
117 |
gaaaagaaatagttccaaactnnnnnnnngcatatataataagcataatcgaccaaaaccgtttaacttttaatcaaactgaagttttcattcttcttct |
216 |
Q |
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| T |
32883234 |
aaaaaaaaatagttccaaact-----aaagcatatataataa----aatcgaccaaaaccgtttaacttttaattaaacttaaggtttcattctccttct |
32883324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 32877289 - 32877434
Alignment:
| Q |
17 |
aatgttcaagatataaagtgttacacatccactaaatggatgtattcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttcca |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32877289 |
aatgttcaagatataaagtggtacacatccactacatggatgtattcgtttgctatttttatctggttctaa-------------atagcatattttcca |
32877375 |
T |
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| Q |
117 |
gaaaagaaatagttccaaactnnnnnnnngcatatataataagcataatcgaccaaaacc |
176 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32877376 |
aaaaacaaatagttccaaact-aaaaaaagcatatataataagcataatcgaccaaaacc |
32877434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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