View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_32 (Length: 237)
Name: NF6459_high_32
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11123317 - 11123529
Alignment:
| Q |
1 |
tttattttagtataaggggaaaagaaactaagnnnnnnnntttacaccttttttccataactataagtatgacaatgaataaatatgctacaatgagtag |
100 |
Q |
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| T |
11123317 |
tttattttagtataaggggaaaagaaactaagaaaaaaaatttacacctt--------aactataagtatgacaatgaataaatttgctacaatgagttg |
11123408 |
T |
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| Q |
101 |
taataaaataactgcgcaagattataattttaacacaatataaaattacaagatcttagtatcttatatacatatattattg-aaatggtttctgtttct |
199 |
Q |
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| T |
11123409 |
taataaaataactgcgcaaggttataattttaacac-atataaaattacaagatcttagtatcttatatacatatattattgaaaatggtttctttttct |
11123507 |
T |
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| Q |
200 |
tatattacaaacagattattac |
221 |
Q |
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||||||||||||| |||||||| |
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| T |
11123508 |
tatattacaaacatattattac |
11123529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 11127580 - 11127709
Alignment:
| Q |
48 |
cttttttccataactataagtatgacaatgaataaatatgctacaatgagtagtaataaaataactgcgcaagattataattttaacacaatataaaatt |
147 |
Q |
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| T |
11127580 |
cttttttctgtaactataagtatgacaatgaataaatatgctacaatgagttgtaataaaataactgcgcaagattataattttaacacaatataaaatt |
11127679 |
T |
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| Q |
148 |
acaagatcttagtatcttatatacatatat |
177 |
Q |
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| T |
11127680 |
acaagatcttagtatcttatatacatatat |
11127709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 11142822 - 11142928
Alignment:
| Q |
70 |
tgacaatgaataaatatgctacaatgagtagtaataaaataactgcgcaa-gattataattttaacacaatataaaattacaagatcttagtatcttata |
168 |
Q |
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| T |
11142822 |
tgacaatgaataaatatgctataatgagttatta-aaaataatcaggcaaagattataattttcacacaatataaaattacaagatcttagtatcttaaa |
11142920 |
T |
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| Q |
169 |
tacatata |
176 |
Q |
| |
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| |||||| |
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| T |
11142921 |
ttcatata |
11142928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 11140186 - 11140236
Alignment:
| Q |
126 |
aattttaacacaatataaaattacaagatcttagtatcttatatacatata |
176 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
11140186 |
aattttcacacagtataaaattacaagatcttagtatcttaaattcatata |
11140236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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