View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_33 (Length: 236)
Name: NF6459_high_33
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31221540 - 31221743
Alignment:
| Q |
17 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31221540 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctttcattggactagaagttgtccaattattttctccacta |
31221639 |
T |
|
| Q |
117 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttta |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221640 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttta |
31221739 |
T |
|
| Q |
217 |
atat |
220 |
Q |
| |
|
|||| |
|
|
| T |
31221740 |
atat |
31221743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31182964 - 31183167
Alignment:
| Q |
17 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | || || ||||| | ||||||||||||||||||| |
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|
| T |
31182964 |
aatatgacagacagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttgactttcac-agaagatttccaattattttctccact |
31183062 |
T |
|
| Q |
116 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttt |
215 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
31183063 |
acatggatctttgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacctgtgctgtatattaattcaaaaccaaaatttgtttt |
31183162 |
T |
|
| Q |
216 |
aatat |
220 |
Q |
| |
|
||||| |
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|
| T |
31183163 |
aatat |
31183167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 31201988 - 31202191
Alignment:
| Q |
17 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || ||||| | ||||||||||||||||| | |
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| T |
31201988 |
aatatgacagacagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttaacttgcac-agaagatttccaattattttctccagt |
31202086 |
T |
|
| Q |
116 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
31202087 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtctttgctatctctttcataacttttactgtatattaattcaaaaccaaaatttgtttt |
31202186 |
T |
|
| Q |
216 |
aatat |
220 |
Q |
| |
|
||||| |
|
|
| T |
31202187 |
aatat |
31202191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 31237322 - 31237506
Alignment:
| Q |
17 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
116 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||||| |||||| ||| ||| |||||| |
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|
| T |
31237322 |
aatatggcacacagtggcattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactagaagatgtccagttactttgtccactg |
31237421 |
T |
|
| Q |
117 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaac |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
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|
| T |
31237422 |
catggatctatgctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactgtatatt-attcaaaac |
31237506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 31248221 - 31248387
Alignment:
| Q |
17 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
116 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||| |||||| ||| ||| |||||| |
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|
| T |
31248221 |
aatatggcagacagtggaattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactaga---tgtccagttactttgtccactg |
31248317 |
T |
|
| Q |
117 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactg |
186 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31248318 |
catggatctatgctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactg |
31248387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 36217056 - 36217208
Alignment:
| Q |
20 |
atgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacat |
119 |
Q |
| |
|
|||||| |||||||||||| |||| || |||||||| ||||||||||||||| |||| ||| | || ||||| |||||||||| ||||||||||||| |
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|
| T |
36217056 |
atgacaaacagtggcattgacaaaggtacaattgcatgtgacagcattttcactccctttcacttgaacagaagatgtccaattacgttctccactacat |
36217155 |
T |
|
| Q |
120 |
ggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatcttt |
172 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||||||||| |||||| |
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|
| T |
36217156 |
ggatctacactgaaatcccaatctttctttccaagtgtcttagctatatcttt |
36217208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 19974201 - 19974068
Alignment:
| Q |
41 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
139 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
19974201 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
19974103 |
T |
|
| Q |
140 |
atccttcttcccaagtgtcttagctacatctttca |
174 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
19974102 |
atcctttttcccaagtgttttacctatgtctttca |
19974068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 20994293 - 20994160
Alignment:
| Q |
41 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
139 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
20994293 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
20994195 |
T |
|
| Q |
140 |
atccttcttcccaagtgtcttagctacatctttca |
174 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
20994194 |
atcctttttcccaagtgttttacctatgtctttca |
20994160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 21018632 - 21018765
Alignment:
| Q |
41 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
139 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
21018632 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
21018730 |
T |
|
| Q |
140 |
atccttcttcccaagtgtcttagctacatctttca |
174 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
21018731 |
atcctttttcccaagtgttttacctatgtctttca |
21018765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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