View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6459_high_38 (Length: 226)

Name: NF6459_high_38
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6459_high_38
NF6459_high_38
[»] chr4 (7 HSPs)
chr4 (105-226)||(26085294-26085415)
chr4 (122-174)||(26048361-26048413)
chr4 (122-174)||(26053542-26053594)
chr4 (122-174)||(26098702-26098754)
chr4 (190-226)||(26056142-26056178)
chr4 (190-226)||(26067804-26067840)
chr4 (190-226)||(26111716-26111752)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 26085294 - 26085415
Alignment:
Q  105 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaac 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26085294 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattactaattgaagttagagaacttcaatgatgaaaatgaaac 26085393  T
Q  205 ctgggtcttgggaacagcaaca 226  Q
    |||||||||||| |||||||||    
T  26085394 ctgggtcttgggtacagcaaca 26085415  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 26048361 - 26048413
Alignment:
Q  122 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26048361 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26048413  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 26053542 - 26053594
Alignment:
Q  122 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26053542 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26053594  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 26098702 - 26098754
Alignment:
Q  122 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  26098702 ctcacataatattgataatgatgaagaaaggtattataaaattacaagttgaa 26098754  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 26056142 - 26056178
Alignment:
Q  190 tgatgaaaatgaaacctgggtcttgggaacagcaaca 226  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26056142 tgatgaaaatgaaacctgggtcttgggtacagcaaca 26056178  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 26067804 - 26067840
Alignment:
Q  190 tgatgaaaatgaaacctgggtcttgggaacagcaaca 226  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26067804 tgatgaaaatgaaacctgggtcttgggtacagcaaca 26067840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 26111716 - 26111752
Alignment:
Q  190 tgatgaaaatgaaacctgggtcttgggaacagcaaca 226  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26111716 tgatgaaaatgaaacctgggtcttgggtacagcaaca 26111752  T

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