View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_39 (Length: 223)
Name: NF6459_high_39
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 38052512 - 38052319
Alignment:
| Q |
15 |
cacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccaccactgttct |
114 |
Q |
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| T |
38052512 |
cacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccaccactgttct |
38052413 |
T |
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| Q |
115 |
gttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgtggtggcacacagtgttgcattagagctgaaagaagag |
208 |
Q |
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| T |
38052412 |
gttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgtggtggtacacagtgttgcattagagctgaaagaagag |
38052319 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 41239942 - 41239896
Alignment:
| Q |
15 |
cacagaaactttccaagcctttttcaaatcatgaggttttttataag |
61 |
Q |
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| T |
41239942 |
cacagaaactttccaagcctttttcaaatcataaggtcttttataag |
41239896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 39679965 - 39679775
Alignment:
| Q |
16 |
acagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccaccactgttctg |
115 |
Q |
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| T |
39679965 |
acagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttcaccccaccaattttctg |
39679866 |
T |
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| Q |
116 |
ttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgtggtggcacacagtgttgcattagagctgaaagaag |
206 |
Q |
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| T |
39679865 |
atcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcagaaagaag |
39679775 |
T |
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