View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6459_high_4 (Length: 596)
Name: NF6459_high_4
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 20 - 587
Target Start/End: Original strand, 46231045 - 46231613
Alignment:
| Q |
20 |
tcagtaagtttggtcactagactcttcgaagctagatatttttcagaaagcaactttcttgaatgtaacattggtcataatccaagctatgtttggccaa |
119 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46231045 |
tcagaaagtttggtcactagactcttcaaagctagatatttttcataaagcaactttcttgaatgcaacattggtcataatccaagctatgtttggccaa |
46231144 |
T |
|
| Q |
120 |
gcatatggagtgcaaaatttgttgtttgcaaaggacataaatggtgtattgacacgggtcatgatgggagcataattggttatatgatggtaccagctcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46231145 |
gcatatggagtgcaaaatttgttgtttgcaaaggacataaatggtgtattgacacgggtcatgatgggagcataattggttatatgatggtaccagctcc |
46231244 |
T |
|
| Q |
220 |
tgacaatctcggacctggtgcaagttgacagaaaggtgtgggactttaatctgattcaagatctagttggtaatataaatgaagcatcggggaagatatc |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46231245 |
tgacaatctcggatctggtgcaagttgacagaaaagtgtgggactttaatctgattcaagatctagttggtaatataaatgaagcatcggggaagatatc |
46231344 |
T |
|
| Q |
320 |
acaaacacttcttattgaatctctccaagaggataaaatcatttggaaatatgagaagaatggtcactatttggtaaagagtgtgtaccga-ttttttat |
418 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46231345 |
acaaacacctcttattgaatctatccaagaggataaaatcaattggaaatatgagaagaatggtcactatttggtaaagagtgtgtaccgatttttttat |
46231444 |
T |
|
| Q |
419 |
agacgagactctggatacaagtccttttcaagtagatggaaattggaatctcatttggcgcgccaaaagttaatcatttccgatgacgtatttgtagaaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46231445 |
agacgagactctggatacaagtccttttcaagtagatggaaattggaatctcatttggcgcgccaaaagttaatcatttccgatgacgtatttgtagaaa |
46231544 |
T |
|
| Q |
519 |
ttgtttacctactcgaatccgactccaaaaccgtggagtgatcattgtcctaatagttgcgccctatgc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46231545 |
ttgtttacctactcgaatccgactccaaaaccgtggagtgatcattgtcctaatagttgcgctctatgc |
46231613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University