View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_high_42 (Length: 205)
Name: NF6459_high_42
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27893371 - 27893566
Alignment:
| Q |
1 |
aaaaaagtctcgtatgttcatgtcctcaggcccctgctctctaagcagacaatataaagtgtctttatatactaaaaggtcccatttgcattgcagaaat |
100 |
Q |
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| T |
27893371 |
aaaaaagtctcgtatgttcatgtcctcaggcccctgctctctaagcagacaatataaagtgtctttatatactaaaaggtcccatttgcattgcagaaat |
27893470 |
T |
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| Q |
101 |
ctaataacaatctttataattcaatttaataagacaggtagctatataggggccggagtggagagacacttatctcactcataatttactgatgat |
196 |
Q |
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| T |
27893471 |
ctaataacaatctttataattcaatttaacaagacaggtagctatataggggccggagtggagagacacttatctcactcataatttactaatgat |
27893566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 27921735 - 27921790
Alignment:
| Q |
140 |
agctatataggggccggagtggagagacacttatc--tcactcataatttactgat |
193 |
Q |
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| T |
27921735 |
agctatataggggccggaatggacagacatttatcattcactcataatttattgat |
27921790 |
T |
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