View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6459_low_1 (Length: 937)

Name: NF6459_low_1
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6459_low_1
NF6459_low_1
[»] chr3 (25 HSPs)
chr3 (7-922)||(10878291-10879206)
chr3 (638-790)||(10917628-10917777)
chr3 (191-247)||(15960505-15960561)
chr3 (692-790)||(10922909-10923005)
chr3 (460-522)||(14954593-14954655)
chr3 (816-893)||(15331827-15331905)
chr3 (662-789)||(16201793-16201919)
chr3 (676-733)||(20736632-20736690)
chr3 (675-803)||(20747248-20747374)
chr3 (814-918)||(11830037-11830145)
chr3 (692-808)||(13178475-13178592)
chr3 (705-777)||(4768210-4768281)
chr3 (851-918)||(13178392-13178459)
chr3 (636-698)||(15332014-15332076)
chr3 (474-522)||(12727148-12727196)
chr3 (474-522)||(12963998-12964046)
chr3 (473-521)||(19250301-19250349)
chr3 (466-522)||(21639193-21639249)
chr3 (675-777)||(11073835-11073937)
chr3 (460-514)||(4433150-4433204)
chr3 (689-790)||(14427635-14427736)
chr3 (473-522)||(3237890-3237939)
chr3 (755-808)||(3646619-3646672)
chr3 (474-547)||(11073624-11073695)
chr3 (638-719)||(21528691-21528775)
[»] chr8 (23 HSPs)
chr8 (474-886)||(18565166-18565577)
chr8 (662-918)||(23433447-23433703)
chr8 (675-808)||(21838307-21838441)
chr8 (707-887)||(20267757-20267937)
chr8 (707-887)||(21054386-21054566)
chr8 (712-808)||(211410-211506)
chr8 (712-808)||(240750-240846)
chr8 (712-808)||(725033-725129)
chr8 (712-808)||(794105-794201)
chr8 (675-808)||(5825265-5825398)
chr8 (638-778)||(13644627-13644768)
chr8 (638-778)||(13745052-13745193)
chr8 (460-522)||(17287076-17287138)
chr8 (432-493)||(20310890-20310951)
chr8 (432-493)||(21097523-21097584)
chr8 (529-599)||(5825124-5825193)
chr8 (852-918)||(5825816-5825881)
chr8 (690-770)||(23586710-23586790)
chr8 (473-522)||(30422343-30422392)
chr8 (466-522)||(18676839-18676895)
chr8 (466-522)||(22672960-22673015)
chr8 (474-522)||(40846317-40846365)
chr8 (474-522)||(23586996-23587046)
[»] chr6 (19 HSPs)
chr6 (541-899)||(17206201-17206554)
chr6 (502-918)||(34659189-34659605)
chr6 (707-808)||(19730888-19730989)
chr6 (705-808)||(27167296-27167397)
chr6 (692-808)||(21689464-21689581)
chr6 (692-797)||(20396335-20396440)
chr6 (675-735)||(10481542-10481603)
chr6 (458-522)||(11129932-11129995)
chr6 (191-247)||(17446809-17446865)
chr6 (707-778)||(4312021-4312091)
chr6 (621-688)||(19122481-19122548)
chr6 (466-522)||(13435072-13435128)
chr6 (474-522)||(32543458-32543506)
chr6 (467-521)||(8868903-8868958)
chr6 (851-918)||(19731005-19731071)
chr6 (704-790)||(20396031-20396116)
chr6 (460-514)||(28252366-28252420)
chr6 (473-522)||(15301412-15301461)
chr6 (474-522)||(15532536-15532585)
[»] chr7 (20 HSPs)
chr7 (621-803)||(19143409-19143592)
chr7 (621-803)||(20742808-20742991)
chr7 (704-789)||(19414083-19414168)
chr7 (407-790)||(20052478-20052865)
chr7 (163-263)||(13262726-13262826)
chr7 (675-790)||(22974597-22974712)
chr7 (506-599)||(10984194-10984289)
chr7 (472-542)||(9802127-9802196)
chr7 (474-520)||(16033134-16033180)
chr7 (473-522)||(16557525-16557574)
chr7 (473-522)||(16608088-16608137)
chr7 (477-599)||(17916931-17917050)
chr7 (532-573)||(19843294-19843334)
chr7 (474-522)||(33604099-33604147)
chr7 (189-263)||(9064520-9064594)
chr7 (472-542)||(9761734-9761803)
chr7 (460-514)||(13263017-13263071)
chr7 (460-514)||(18440570-18440624)
chr7 (461-522)||(13027866-13027927)
chr7 (474-522)||(13138840-13138889)
[»] chr5 (25 HSPs)
chr5 (642-882)||(22747771-22748011)
chr5 (474-808)||(18303561-18303892)
chr5 (474-779)||(12063247-12063555)
chr5 (622-778)||(9823621-9823776)
chr5 (640-777)||(19570247-19570385)
chr5 (665-790)||(24495125-24495249)
chr5 (707-790)||(24885850-24885931)
chr5 (726-797)||(12046681-12046752)
chr5 (819-918)||(19570134-19570233)
chr5 (675-770)||(24515482-24515576)
chr5 (703-789)||(28759885-28759970)
chr5 (692-808)||(24163080-24163196)
chr5 (471-522)||(33021842-33021893)
chr5 (474-522)||(9088174-9088223)
chr5 (692-788)||(22797701-22797798)
chr5 (474-522)||(19642716-19642764)
chr5 (466-522)||(21199905-21199961)
chr5 (474-522)||(31589888-31589936)
chr5 (506-599)||(12046483-12046574)
chr5 (851-918)||(18303908-18303974)
chr5 (460-514)||(13533162-13533216)
chr5 (460-514)||(17456607-17456661)
chr5 (689-770)||(22820779-22820860)
chr5 (474-522)||(6513324-6513373)
chr5 (473-522)||(19570501-19570549)
[»] chr1 (16 HSPs)
chr1 (616-894)||(12439759-12440037)
chr1 (535-598)||(9757307-9757370)
chr1 (665-778)||(19019801-19019914)
chr1 (623-748)||(9757155-9757278)
chr1 (474-545)||(12440083-12440153)
chr1 (467-522)||(27857974-27858029)
chr1 (467-522)||(23975674-23975729)
chr1 (460-514)||(9345960-9346014)
chr1 (665-790)||(12669760-12669884)
chr1 (473-522)||(22153020-22153069)
chr1 (721-778)||(31910762-31910818)
chr1 (471-514)||(46181690-46181733)
chr1 (465-522)||(22601413-22601471)
chr1 (460-522)||(23917082-23917144)
chr1 (460-518)||(25449426-25449483)
chr1 (186-263)||(24155117-24155194)
[»] scaffold0711 (3 HSPs)
scaffold0711 (636-814)||(2222-2401)
scaffold0711 (405-521)||(2659-2776)
scaffold0711 (816-894)||(2170-2248)
[»] chr4 (18 HSPs)
chr4 (616-894)||(22317199-22317478)
chr4 (433-763)||(8910812-8911134)
chr4 (675-790)||(18445318-18445432)
chr4 (638-790)||(22223402-22223554)
chr4 (500-573)||(18777480-18777553)
chr4 (450-522)||(21810747-21810819)
chr4 (713-808)||(18777245-18777339)
chr4 (692-810)||(39981166-39981285)
chr4 (852-918)||(39981085-39981151)
chr4 (675-790)||(21588981-21589095)
chr4 (460-522)||(17527246-17527308)
chr4 (186-250)||(17527492-17527556)
chr4 (460-522)||(14905193-14905256)
chr4 (692-762)||(19052737-19052807)
chr4 (476-522)||(13026985-13027031)
chr4 (460-514)||(14836899-14836953)
chr4 (469-522)||(14903275-14903327)
chr4 (474-522)||(24628765-24628814)
[»] chr2 (20 HSPs)
chr2 (685-893)||(26653877-26654087)
chr2 (662-918)||(8684985-8685242)
chr2 (636-778)||(26655295-26655438)
chr2 (636-779)||(17418178-17418322)
chr2 (642-918)||(16152791-16153066)
chr2 (321-422)||(25917343-25917444)
chr2 (675-762)||(21822978-21823066)
chr2 (628-777)||(21823789-21823939)
chr2 (665-778)||(19563955-19564068)
chr2 (704-778)||(21770253-21770326)
chr2 (474-599)||(24216868-24216990)
chr2 (636-790)||(27766114-27766267)
chr2 (472-522)||(24851529-24851579)
chr2 (473-522)||(22312716-22312765)
chr2 (466-522)||(24575218-24575275)
chr2 (466-514)||(40780496-40780544)
chr2 (622-762)||(17435587-17435725)
chr2 (460-522)||(22782488-22782550)
chr2 (655-779)||(24216647-24216772)
chr2 (450-522)||(27766406-27766479)
[»] scaffold0211 (1 HSPs)
scaffold0211 (621-808)||(25067-25253)
[»] scaffold0004 (4 HSPs)
scaffold0004 (621-797)||(382128-382305)
scaffold0004 (502-569)||(382010-382074)
scaffold0004 (466-522)||(210595-210650)
scaffold0004 (835-893)||(382315-382373)
[»] scaffold0084 (2 HSPs)
scaffold0084 (638-803)||(18067-18233)
scaffold0084 (640-799)||(30601-30761)
[»] scaffold0496 (1 HSPs)
scaffold0496 (7-198)||(10857-11048)
[»] scaffold0062 (1 HSPs)
scaffold0062 (642-808)||(1028-1195)
[»] scaffold0412 (1 HSPs)
scaffold0412 (192-291)||(557-656)
[»] scaffold0044 (1 HSPs)
scaffold0044 (192-293)||(92267-92368)
[»] scaffold0121 (1 HSPs)
scaffold0121 (692-788)||(10792-10888)
[»] scaffold0002 (2 HSPs)
scaffold0002 (692-808)||(128396-128513)
scaffold0002 (851-918)||(128529-128596)
[»] scaffold0041 (2 HSPs)
scaffold0041 (849-887)||(25972-26010)
scaffold0041 (495-569)||(25772-25841)
[»] scaffold0471 (1 HSPs)
scaffold0471 (473-522)||(2650-2699)
[»] scaffold0315 (1 HSPs)
scaffold0315 (466-522)||(7858-7914)
[»] scaffold0275 (1 HSPs)
scaffold0275 (474-522)||(23824-23872)
[»] scaffold0032 (1 HSPs)
scaffold0032 (675-734)||(78757-78817)
[»] scaffold0527 (2 HSPs)
scaffold0527 (704-795)||(1143-1234)
scaffold0527 (704-795)||(9206-9297)
[»] scaffold0439 (1 HSPs)
scaffold0439 (460-522)||(7574-7637)
[»] scaffold0300 (1 HSPs)
scaffold0300 (722-797)||(11516-11590)
[»] scaffold0047 (1 HSPs)
scaffold0047 (460-514)||(33733-33787)
[»] scaffold0038 (1 HSPs)
scaffold0038 (460-514)||(52566-52620)
[»] scaffold0290 (1 HSPs)
scaffold0290 (466-522)||(19520-19577)


Alignment Details
Target: chr3 (Bit Score: 896; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 7 - 922
Target Start/End: Complemental strand, 10879206 - 10878291
Alignment:
Q  7 agcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879206 agcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg 10879107  T
Q  107 atgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatcttcaataata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879106 atgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatcttcaataata 10879007  T
Q  207 tcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttcttag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879006 tcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttcttag 10878907  T
Q  307 agtagctgtcattttcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatatt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10878906 agtagctgtcattttcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaagtgctaggaacattttctaaggacatatt 10878807  T
Q  407 tttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttga 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10878806 tttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctgataccaactgaaggtgagaaaaatacaataagaagggttga 10878707  T
Q  507 attgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatgtatgcag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10878706 attgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatgcatgcag 10878607  T
Q  607 tagaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878606 tagaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc 10878507  T
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatac 806  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10878506 ttgcacttccaagcgatttcactataatcactctggattacaaattgttcaaggactcttccaaaagacttctcaatgctcaagaacaactacaagatac 10878407  T
Q  807 tttttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagc 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878406 tttttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagc 10878307  T
Q  907 ataactgcttaaaact 922  Q
    ||||||||||||||||    
T  10878306 ataactgcttaaaact 10878291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 638 - 790
Target Start/End: Original strand, 10917628 - 10917777
Alignment:
Q  638 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcactataatcac 737  Q
    ||||||| | |||| ||||||| ||||||||||||  ||||||||| |||||| ||||||| ||||||||||| |||||||| ||||||| ||||||| |    
T  10917628 agagagaaagagcagacacaaa-aaattttatactagttcctcccacaacacaggagtagtccagtcccttgctcttccaagggatttcattataatctc 10917726  T
Q  738 tctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
     |   ||||||| | | | |||||||||||||||| |||||||||||||||||    
T  10917727 ac-atattacaa-tggcttaaggactcttccaagaaacttctcaatgctcaag 10917777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 15960561 - 15960505
Alignment:
Q  191 accatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacat 247  Q
    ||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||    
T  15960561 accatcttcaagaatatcccatagttcatcatctaaacccatgatgtgactatacat 15960505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 790
Target Start/End: Original strand, 10922909 - 10923005
Alignment:
Q  692 gagtagttcagtcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| ||||| ||||||||| |||| ||||||| ||||||| | | | ||||||| ||| ||||| |||||||||||| |||||||||||||||||    
T  10922909 gagtagtccagtctcttgcactttcaagggatttcattataatctcacag-attacaa-ttgctcaagtactcttccaagaaacttctcaatgctcaag 10923005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 14954593 - 14954655
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  14954593 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 14954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 816 - 893
Target Start/End: Complemental strand, 15331905 - 15331827
Alignment:
Q  816 aagcacaactgcttaagacttcctgctataaggcactacctaaagactttc-tgctcaaggacaactccaagatacttc 893  Q
    ||||||| | ||| ||||||||||||| ||||||||||||||||||||| | ||||||||||||| || |||| |||||    
T  15331905 aagcacaccagctcaagacttcctgctctaaggcactacctaaagacttccttgctcaaggacaattcaaagaaacttc 15331827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 789
Target Start/End: Complemental strand, 16201919 - 16201793
Alignment:
Q  662 aattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactc-tggattacaagttgttcaag 759  Q
    |||||||||||  ||| ||| | |||||| ||||| | ||||||| ||||||||||||| |||||||||||||  | || |  |||||| | ||||||||    
T  16201919 aattttatactggttcatcctacaacacaggagtaatccagtccccttgcacttccaagggatttcactataa--attcataaattaca-gatgttcaag 16201823  T
Q  760 gactcttccaagagacttctcaatgctcaa 789  Q
    |||||||||||||||||||||||| |||||    
T  16201822 gactcttccaagagacttctcaattctcaa 16201793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 733
Target Start/End: Complemental strand, 20736690 - 20736632
Alignment:
Q  676 tcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataa 733  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  20736690 tcctcccataacacatgagtagtccagtccccttgcactttcaagggatttcactataa 20736632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 675 - 803
Target Start/End: Complemental strand, 20747374 - 20747248
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||||||||||||  |||||| ||||||| |||||||| |||| ||||||||||||| |  |    ||||||| | | ||||||||||||| |||||    
T  20747374 ttcctcccataacacaaaagtagtccagtccccttgcactttcaagggatttcactataacc--taaacattacaaat-gctcaaggactcttctaagag 20747278  T
Q  774 acttctcaatgctcaagaacaactacaaga 803  Q
    ||||||||||||||||| |||  |||||||    
T  20747277 acttctcaatgctcaagcacacttacaaga 20747248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 814 - 918
Target Start/End: Complemental strand, 11830145 - 11830037
Alignment:
Q  814 ttaagcacaactgcttaagacttcctgctataaggca-----ctacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcat 908  Q
    ||||||||||||| ||||||||||||||| || || |     ||||||||||||||  ||| |||| |||||||||||| |||||| ||| ||||||||     
T  11830145 ttaagcacaactgtttaagacttcctgctcta-ggaatatatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgcttaagcac 11830047  T
Q  909 aactgcttaa 918  Q
    ||||||||||    
T  11830046 aactgcttaa 11830037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 808
Target Start/End: Complemental strand, 13178592 - 13178475
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| ||||||| |||||||| |||| |||||||| |||| |||| |||||||||| | | | |||||| || ||||||||||||||  | ||||||    
T  13178592 gagtagtccagtccccttgcacttgcaagagatttcacaataaccactatggattacaattagcttaaggacactaccaagagacttctcttttctcaag 13178493  T
Q  791 aacaactacaagatactt 808  Q
     |||||| ||||| ||||    
T  13178492 cacaactgcaagagactt 13178475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 705 - 777
Target Start/End: Complemental strand, 4768281 - 4768210
Alignment:
Q  705 ccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagactt 777  Q
    ||||||||||||||| ||||||||||||||| | || ||||||||  || |||||||||||| ||||||||||    
T  4768281 ccttgcacttccaagagatttcactataatctcactagattacaa-atgctcaaggactctttcaagagactt 4768210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 851 - 918
Target Start/End: Complemental strand, 13178459 - 13178392
Alignment:
Q  851 ctacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||||||||| |||| ||||||||||| |||||||||| |||| ||||| |||||||  ||||||||||    
T  13178459 ctacctaaaaacttcctgctcaaggataactccaagagacttacatttgcttaagcgcaactgcttaa 13178392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 698
Target Start/End: Complemental strand, 15332076 - 15332014
Alignment:
Q  636 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagt 698  Q
    |||||||||||||||| ||| |||| |||||||||||  ||||||||| ||||||||| ||||    
T  15332076 agagagagagaaagcagacaaaaagcaattttatactggttcctcccacaacacatgattagt 15332014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 12727196 - 12727148
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  12727196 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 12727148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 12964046 - 12963998
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  12964046 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 12963998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 521
Target Start/End: Complemental strand, 19250349 - 19250301
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttt 521  Q
    |||||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  19250349 ctgaaggtgagaaaaacacaagaagaggggttgaattgtgttagctttt 19250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 21639249 - 21639193
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||| ||||||||||| |||| |||  |||||||||||||||||||||||    
T  21639249 ataccaattgatggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 21639193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 777
Target Start/End: Original strand, 11073835 - 11073937
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||| | ||| || ||||||| ||||||| ||||||||| ||| ||||||||||||||| | ||  ||||||| ||| | ||||| |||||||||||    
T  11073835 ttcctccaacaacgcaggagtagtccagtccccttgcacttctaagagatttcactataatctcactatattacaa-ttgcttaaggaatcttccaagag 11073933  T
Q  774 actt 777  Q
    ||||    
T  11073934 actt 11073937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 4433150 - 4433204
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  4433150 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 4433204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 689 - 790
Target Start/End: Complemental strand, 14427736 - 14427635
Alignment:
Q  689 catgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctc 787  Q
    |||||||||| ||||||| |||  |||||||| |||||||||| |||||  |   ||||||| ||| |||||||| |||||||||||||||  |||||||    
T  14427736 catgagtagtccagtccccttgagcttccaagggatttcactagaatcatacaatattacaa-ttgctcaaggacacttccaagagacttcgaaatgctc 14427638  T
Q  788 aag 790  Q
    |||    
T  14427637 aag 14427635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 3237890 - 3237939
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  3237890 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 3237939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 808
Target Start/End: Original strand, 3646619 - 3646672
Alignment:
Q  755 tcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| ||||||||||||||| | ||||||||| |||||| ||||| ||||    
T  3646619 tcaaggacacttccaagagacttccctatgctcaagcacaactgcaagagactt 3646672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 11073624 - 11073695
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagtgttta 547  Q
    ||||||||||||||| |||| |||  |||||||||||||||||||||||   | ||||||||||| ||||||||    
T  11073624 tgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt-ctgatttctttttctaagtgttta 11073695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 21528775 - 21528691
Alignment:
Q  638 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacat--gagtagttcagt-cccttgcacttccaag 719  Q
    |||||||||||||| |||||||| |||||||||||  ||||||| | |||| ||   |||||| |||| ||||||||||||||||    
T  21528775 agagagagaaagcagacacaaagcaattttatactggttcctcctacaacatatagtagtagtccagtccccttgcacttccaag 21528691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 6e-89; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 474 - 886
Target Start/End: Original strand, 18565166 - 18565577
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggc-tttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgt 572  Q
    ||||||||||||||| |||| |||  |||||||||||||||||| ||||||||| ||||||||||| |||||| || ||||||| |||||||||||||||    
T  18565166 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcctttttgacgatttctttttctaagtgttcattaaaacctagtcagaatctgatgt 18565265  T
Q  573 tatagattctgactcggagtctgaatgtatgcagtagaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatact 672  Q
    |  |||||||||||| |||| ||||||    |||  || |||  ||  | ||||||||||||| |||||||||||| || |||||||| |||||||||||    
T  18565266 tgcagattctgactcagagtttgaatg----cagcggataacataaaaccaagataaagagtccgagagagagaaaacagacacaaagcaattttatact 18565361  T
Q  673 ctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaag 771  Q
      ||||||||| |||||| ||||||| ||||||| ||||| ||||||  |||||||||||||||||| |||||||||| ||| |||||||| || |||||    
T  18565362 agttcctcccacaacacaagagtagtccagtccccttgcatttccaatggatttcactataatcactatggattacaacttgctcaaggacactaccaag 18565461  T
Q  772 agacttctcaatgctcaagaacaactacaagatactttt-tgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgct 870  Q
    |||||||||  |||||||| |||||| ||||| |||||| || ||||||||||| ||||| ||  ||||||| |||| ||||||||||||||||  ||||    
T  18565462 agacttctctttgctcaagcacaactgcaagagacttttatgcttaagcacaaccgcttatgatctcctgctctaagacactacctaaagacttcttgct 18565561  T
Q  871 caaggacaactccaag 886  Q
    ||||||||||||||||    
T  18565562 caaggacaactccaag 18565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 662 - 918
Target Start/End: Complemental strand, 23433703 - 23433447
Alignment:
Q  662 aattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaagg 760  Q
    ||||||||| |  ||||||||| |||||| ||||||| |||| |||||||||||||||| |||||||||||||| || |  |||||||| | | ||||||    
T  23433703 aattttatagtggttcctcccacaacacaggagtagtccagttcccttgcacttccaagggatttcactataataacacatgattacaaat-gctcaagg 23433605  T
Q  761 actcttccaagagacttctcaatgctcaagaacaactacaagatactttttga-ttaagcacaactgcttaagacttcctgctataaggcactacctaaa 859  Q
    |||||||||||| |||||||  |||| ||  |||| | ||||| |||  |  | ||||||||| |||||||||||||  |||| || | |||||||||||    
T  23433604 actcttccaagaaacttctctttgcttaaccacaattgcaagagactcctatacttaagcacacctgcttaagactta-tgctctaggacactacctaaa 23433506  T
Q  860 gactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||||| || ||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  23433505 gacttccttctcaaggacaactccaataaacttccatttgcttaagcacaactgcttaa 23433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 675 - 808
Target Start/End: Original strand, 21838307 - 21838441
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtcccttgc-acttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||||| || ||| |||||||  |||||||| | ||||||||| |||||||| | |||||||||||||||||| ||  |||||| ||||||  ||||    
T  21838307 ttcctcccacaagacaggagtagtctagtccctttccacttccaagagatttcaccagaatcactctggattacaaatttctcaagggctcttctcagag 21838406  T
Q  774 acttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| |||||||| |||||| ||||| ||||    
T  21838407 acttctcagtgctcaagcacaactgcaagagactt 21838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 707 - 887
Target Start/End: Complemental strand, 20267937 - 20267757
Alignment:
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatac 806  Q
    ||||||||||||| |||||||||||| |||| |  |||||||| ||  |||||||| ||||||||||||||||||||| |||||  ||||| ||||| |     
T  20267937 ttgcacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagat 20267838  T
Q  807 tt-tttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaaga 887  Q
    || | || ||||  |||||||| ||||| ||||||||  | | ||||||| ||||||||  |||||||| |||||| |||||    
T  20267837 ttctatgcttaaatacaactgcctaagagttcctgct-gaggacactaccaaaagacttcgtgctcaagtacaacttcaaga 20267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 707 - 887
Target Start/End: Complemental strand, 21054566 - 21054386
Alignment:
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatac 806  Q
    ||||||||||||| |||||||||||| |||| |  |||||||| ||  |||||||| ||||||||||||||||||||| |||||  ||||| ||||| |     
T  21054566 ttgcacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagat 21054467  T
Q  807 tt-tttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaaga 887  Q
    || | || ||||  |||||||| ||||| ||||||||  | | ||||||| ||||||||  |||||||| |||||| |||||    
T  21054466 ttctatgcttaaatacaactgcctaagagttcctgct-gaggacactaccaaaagacttcgtgctcaagtacaacttcaaga 21054386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 808
Target Start/End: Complemental strand, 211506 - 211410
Alignment:
Q  712 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||||    
T  211506 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 808
Target Start/End: Original strand, 240750 - 240846
Alignment:
Q  712 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||||    
T  240750 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 240846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 808
Target Start/End: Complemental strand, 725129 - 725033
Alignment:
Q  712 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||||    
T  725129 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 725033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 808
Target Start/End: Original strand, 794105 - 794201
Alignment:
Q  712 cttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||| ||||||||||||||||     |||||||| ||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||||    
T  794105 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatactt 794201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 675 - 808
Target Start/End: Original strand, 5825265 - 5825398
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||| ||| |||||||||||||| ||||||| || ||||| || | |||||||||||||||||||| |||||||| ||| ||||||| |   |||||||    
T  5825265 ttccttccacaacacatgagtagtccagtcccctttcactttcaggggatttcactataatcactctcgattacaacttgctcaagga-tacaccaagag 5825363  T
Q  774 acttctcaatgctcaagaacaactacaagatactt 808  Q
    | ||||||||||||||  |||||| ||||| ||||    
T  5825364 aattctcaatgctcaaacacaactgcaagagactt 5825398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 638 - 778
Target Start/End: Original strand, 13644627 - 13644768
Alignment:
Q  638 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatca 736  Q
    |||||||||||| | ||| |||  |||| ||||||  ||||||||| |||||| ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  13644627 agagagagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatca 13644726  T
Q  737 ctctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    | |   ||||||  ||| || ||||||||| |||||||||||    
T  13644727 cacataattacatattgctctaggactcttacaagagacttc 13644768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 638 - 778
Target Start/End: Original strand, 13745052 - 13745193
Alignment:
Q  638 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatca 736  Q
    |||||||||||| | ||| |||  |||| ||||||  ||||||||| |||||| ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  13745052 agagagagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatca 13745151  T
Q  737 ctctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    | |   ||||||  ||| || ||||||||| |||||||||||    
T  13745152 cacataattacatattgctctaggactcttacaagagacttc 13745193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 17287138 - 17287076
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  17287138 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 17287076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 20310890 - 20310951
Alignment:
Q  432 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 493  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  20310890 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 20310951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 21097523 - 21097584
Alignment:
Q  432 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 493  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  21097523 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 21097584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 599
Target Start/End: Original strand, 5825124 - 5825193
Alignment:
Q  529 ttctttttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatg 599  Q
    |||||| ||| ||||||||||||| ||||||||  ||||||||||  |||||||||||| |||||||||||    
T  5825124 ttctttatctaagtgtttataaaa-cctggtcaacatctgatgttgcagattctgactcagagtctgaatg 5825193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 852 - 918
Target Start/End: Original strand, 5825816 - 5825881
Alignment:
Q  852 tacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    |||||||||||||  ||||||||||||||||||| | |||||| ||| ||||||||||| |||||||    
T  5825816 tacctaaagacttcatgctcaaggacaactccaaaagacttcc-tttgcttaagcataaatgcttaa 5825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 770
Target Start/End: Complemental strand, 23586790 - 23586710
Alignment:
Q  690 atgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaa 770  Q
    ||||||||||||||||| |||||||||||||   ||||||||||||||| || |||||||| |||  ||||||| |||||||    
T  23586790 atgagtagttcagtccccttgcacttccaaggattttcactataatcacactagattacaa-ttgcccaaggacacttccaa 23586710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 30422392 - 30422343
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||| ||||||||||||||| |||||||    
T  30422392 ctgaaggtgagaaaaacacaagaagaggggttgaattgtgtttgcttttt 30422343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 18676839 - 18676895
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  18676839 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 18676895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 22672960 - 22673015
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  22672960 ataccaattgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt 22673015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 40846365 - 40846317
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||    
T  40846365 tgaaggtgagaaaaatacaagaaggggggttgaattgtgttagcttttt 40846317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 23587046 - 23586996
Alignment:
Q  474 tgaaggtgagaaaaa--tacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  23587046 tgaaggtgagaaaaacgtacaataagaaaagttgaattgtgttggcttttt 23586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 2e-67; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 541 - 899
Target Start/End: Original strand, 17206201 - 17206554
Alignment:
Q  541 gtgtttataaaa-acctggtcagaatctgatgttatagattctgactcggagtctgaatgtatgcagtagaaaacggaactcaaagataaagagtcagag 639  Q
    |||||||||||| | || ||||||||| |||||| ||||||||||||| |||||||||||    |||  ||||||  ||| |||| ||||||||| ||||    
T  17206201 gtgtttataaaatatctagtcagaatcggatgttgtagattctgactcagagtctgaatg----cagcggaaaacataacacaaaaataaagagttagag 17206296  T
Q  640 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcact 738  Q
    |||||  ||||| |||||  | |||||||||||  ||||||||| || | | ||||||||||| || |||||||||||||| |||||||| | |||||||    
T  17206297 agaga--aagcagacaca--gtaattttatactagttcctcccacaatataggagtagttcagcccacttgcacttccaagggatttcaccacaatcact 17206392  T
Q  739 ctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt-tttgattaagcacaactgcttaagacttc 837  Q
    ||||||||||   || ||||||||||||||||| |||||||||||||||||| |||||||||||| |||| | || |||||||||||| |||||||||||    
T  17206393 ctggattacatactgatcaaggactcttccaagtgacttctcaatgctcaagcacaactacaagaaacttctatgtttaagcacaactacttaagacttc 17206492  T
Q  838 ctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccatttt 899  Q
    ||||| || | ||||||||||||||||  || |||||||||||||||||| |||||| ||||    
T  17206493 ctgctctatgacactacctaaagacttcttgttcaaggacaactccaagagacttccctttt 17206554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 502 - 918
Target Start/End: Original strand, 34659189 - 34659605
Alignment:
Q  502 gttgaattgtgttggctttttgacggtttctttttctgag-tgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatgt 600  Q
    ||||||||||||||||||| ||| |||||||||||||  | |||| |||| ||||||||||||||||  ||||  ||||||| |||| |||||||||||     
T  34659189 gttgaattgtgttggctttatgaaggtttctttttctttggtgttaataataacctggtcagaatctcttgttgcagattctaactcagagtctgaatg- 34659287  T
Q  601 atgcagtagaaaacg-gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaatttt-atactctttcctcccataacacatgagtagt 698  Q
       |||| || ||   |||| ||||| ||||||||||||||||  ||||||| |||||||| | |||| |||||  ||||||||| |||||| |||||||    
T  34659288 ---cagtggataattagaacacaaagttaaagagtcagagagaaggaaagcagacacaaagtagtttttatactggttcctcccacaacacaagagtagt 34659384  T
Q  699 tcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaact 797  Q
     ||||||| ||| ||||| ||| |||||||||||||||||| ||||||||   ||| |||||||| |||||| ||||||||||  || ||||| ||||||    
T  34659385 ccagtccccttgtacttctaagggatttcactataatcactatggattacgcattgctcaaggacacttccaggagacttctctttgttcaagcacaact 34659484  T
Q  798 acaagatactt-tttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccat 896  Q
     ||||| |||| | || |||| |||| |||||||||||||||  || || | |||||| ||| || ||  ||  ||||||||||||||||| ||||||||    
T  34659485 gcaagagacttatgtgcttaaacacacctgcttaagacttcc-actctaggacactacttaaggatttcttgtccaaggacaactccaagagacttccat 34659583  T
Q  897 tttcttaagcataactgcttaa 918  Q
    || |||||||| ||||| ||||    
T  34659584 ttgcttaagcacaactgtttaa 34659605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 19730888 - 19730989
Alignment:
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatac 806  Q
    ||||| ||||||| ||||||||||||||| | | ||||||||| ||| | |||||| ||||||||||||||||| ||||||||| |||||| ||||| ||    
T  19730888 ttgcatttccaagggatttcactataatctcacaggattacaaattgattaaggacacttccaagagacttctctatgctcaagcacaactgcaagagac 19730987  T
Q  807 tt 808  Q
    ||    
T  19730988 tt 19730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 705 - 808
Target Start/End: Complemental strand, 27167397 - 27167296
Alignment:
Q  705 ccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagat 804  Q
    ||||| ||||| ||| |||||||||||||||||| |||||||||| ||| | |||||| |  ||||||||||||||||||||||||||||||| |||||     
T  27167397 ccttggacttctaagggatttcactataatcact-tggattacaatttgcttaaggacaca-ccaagagacttctcaatgctcaagaacaactgcaagag 27167300  T
Q  805 actt 808  Q
    ||||    
T  27167299 actt 27167296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 808
Target Start/End: Complemental strand, 21689581 - 21689464
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| ||||||| || |||||||||| |||||||||||||||||    |||||||| ||| |||| |||  |||||||||||||  | |||||||||    
T  21689581 gagtagtccagtccccttccacttccaagggatttcactataatcacaactgattacaaattgctcaaagacatttccaagagacttgcctatgctcaag 21689482  T
Q  791 aacaactacaagatactt 808  Q
     |||||||||||| ||||    
T  21689481 cacaactacaagagactt 21689464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 797
Target Start/End: Original strand, 20396335 - 20396440
Alignment:
Q  692 gagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| |||| |||||||||||||||| ||||| | ||||| || ||| |||||||| ||| ||||||||  |  |||||||||||||||||||||||    
T  20396335 gagtagtccagtacccttgcacttccaagggattttagtataaccaatcttgattacaatttgctcaaggac-atagcaagagacttctcaatgctcaag 20396433  T
Q  791 aacaact 797  Q
     ||||||    
T  20396434 tacaact 20396440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 675 - 735
Target Start/End: Original strand, 10481542 - 10481603
Alignment:
Q  675 ttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatc 735  Q
    ||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||    
T  10481542 ttcctcccacaacacaggagtagttcagtccccttgcatttccaagggatttcactataatc 10481603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 11129932 - 11129995
Alignment:
Q  458 gtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| |||||||||| ||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  11129932 gtgctttaataccaacagaaggtgagaaaaatacaagaag-atggttgaattgcgttggcttttt 11129995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 17446865 - 17446809
Alignment:
Q  191 accatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacat 247  Q
    ||||||||||| ||||||||| ||||||||||| | || ||||||||||||||||||    
T  17446865 accatcttcaagaatatcccaaagttcatcatctaaacccatgatgtgactatacat 17446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 707 - 778
Target Start/End: Original strand, 4312021 - 4312091
Alignment:
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    ||||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||| | |||||||||||||    
T  4312021 ttgcacttccaagggatttcactataacctcactggattacaa-ttgctcaaggacacctccaagagacttc 4312091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 621 - 688
Target Start/End: Original strand, 19122481 - 19122548
Alignment:
Q  621 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataaca 688  Q
    ||||||||||||| || |||||||||||||| |||||||| | |||||||||  ||||||||| ||||    
T  19122481 caaagataaagagacacagagagagaaagcagacacaaagcacttttatactagttcctcccacaaca 19122548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 13435072 - 13435128
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  13435072 ataccaattgaaggtgagaaaaaaacaagaaggggggttgaattgtgtttgcttttt 13435128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 32543458 - 32543506
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  32543458 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 32543506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 8868958 - 8868903
Alignment:
Q  467 taccaactgaaggtgagaaaaatacaataaga-agggttgaattgtgttggctttt 521  Q
    ||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||    
T  8868958 taccaactgaaggtgagaaaaatacaagaagagatgattgaattgtgttagctttt 8868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 918
Target Start/End: Original strand, 19731005 - 19731071
Alignment:
Q  851 ctacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    |||||||||||||| ||||||||||||||||| |||| |||||  ||| |||||||| |||| |||||    
T  19731005 ctacctaaagactt-ctgctcaaggacaactctaagagacttcactttgcttaagcacaactacttaa 19731071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 704 - 790
Target Start/End: Original strand, 20396031 - 20396116
Alignment:
Q  704 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    |||||||||||||||| ||||| | ||||| || ||| |||||||| ||| | |||||   | ||||||||||||||||||||||||    
T  20396031 cccttgcacttccaagggattttagtataaccaatcttgattacaatttgcttaaggaaa-taccaagagacttctcaatgctcaag 20396116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 28252420 - 28252366
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  28252420 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 28252366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 15301412 - 15301461
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  15301412 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 15301461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 15532585 - 15532536
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaa-gggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||||| ||||||||||||||| |||||||    
T  15532585 tgaaggtgagaaaaacacaagaagaaggggttgaattgtgttagcttttt 15532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 6e-49; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 621 - 803
Target Start/End: Complemental strand, 19143592 - 19143409
Alignment:
Q  621 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaag 719  Q
    ||||||||||||| || |||||||||||| | ||||| || ||||||||||   ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  19143592 caaagataaagagacaaagagagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaag 19143493  T
Q  720 cgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaaga 803  Q
     |||||||||||||||||||| |||||||| ||  |||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  19143492 ggatttcactataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaaga 19143409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 621 - 803
Target Start/End: Complemental strand, 20742991 - 20742808
Alignment:
Q  621 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaag 719  Q
    ||||||||||||| || |||||||||||| | ||||| || ||||||||||   ||||||||| |||||| |||||||||||| ||||||||||||||||    
T  20742991 caaagataaagagacaaagagagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaag 20742892  T
Q  720 cgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaaga 803  Q
     |||||||||||||||||||| |||||||| ||  |||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  20742891 ggatttcactataatcactctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaaga 20742808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 704 - 789
Target Start/End: Original strand, 19414083 - 19414168
Alignment:
Q  704 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaa 789  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||| ||  |||||||| || |||||||||||||||||||||||    
T  19414083 cccttgcacttccaagggatttcactataatcaatcttgattacaattttctcaaggacactcccaagagacttctcaatgctcaa 19414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 407 - 790
Target Start/End: Original strand, 20052478 - 20052865
Alignment:
Q  407 tttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaaggg---- 502  Q
    ||||||||||| |||| |||| ||||||||||| ||| |||  |||| | |  |||||||||| |||| ||||||||||| | ||| || ||||||        
T  20052478 tttctcactagttctttttatgtggcacggttaggtgacagagcacataacaggctctaatacaaactaaaggtgagaaacacaca-taggaaggggggg 20052576  T
Q  503 ttgaattgtgttggctttttgacggtttctttttctgagtgttta-taaaaacctggtcagaatctgatgttatagattctgactcggagtctgaatgta 601  Q
    ||||||||||  | |||||||||||||||||||||| || ||||| || |  | ||| ||||||||||||||  |||||||||||| |||||||  ||||    
T  20052577 ttgaattgtg--gcctttttgacggtttctttttctaagcgtttaatacagtcttggacagaatctgatgttgcagattctgactcagagtctgcttgta 20052674  T
Q  602 tgcagta-----gaaaacggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagta 696  Q
     |||| |     ||| ||  |  | ||||||||| |||| |||||||| ||  || |||||| | ||||| ||| |  ||||||||| || ||| |||||    
T  20052675 -gcagaaatacagaacacacagataaaagataaatagtccgagagagataagacaaacacaaggcaattt-atattggttcctcccacaaaacaagagta 20052772  T
Q  697 gttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||  ||| ||||||||||||  || |||||||||||||||||| | |||||||| ||| ||||||| |   ||||||||||||||||||||||||    
T  20052773 gtctagttcccttgcacttcttagggatttcactataatcact-tagattacaacttgctcaagga-tacaccaagagacttctcaatgctcaag 20052865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 13262726 - 13262826
Alignment:
Q  163 ttccttctttatcaacagcaatctcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccacca 262  Q
    ||||||||| ||| | || ||| |||| ||||||||| | ||||||||| |||||||||||||||| |||||| ||||| ||||| ||||| ||||||||    
T  13262726 ttccttcttcatctagaggaatgtcaaaaccatcttctaaaatatcccaaagttcatcatcaatacccatgatatgactgtacatcttacttttccacca 13262825  T
Q  263 a 263  Q
    |    
T  13262826 a 13262826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 675 - 790
Target Start/End: Original strand, 22974597 - 22974712
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||||| | || | |||||||||| |||| ||||||||||||| ||||| | |||||||   || |||||||| ||| |||||||||| ||||||||    
T  22974597 ttcctcccacagcataggagtagttcactccccttgcacttccaagggattttagtataatctaactagattacaa-ttgctcaaggactcgtccaagag 22974695  T
Q  774 acttctcaatgctcaag 790  Q
    |||||||||||||||||    
T  22974696 acttctcaatgctcaag 22974712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 506 - 599
Target Start/End: Complemental strand, 10984289 - 10984194
Alignment:
Q  506 aattgtgttgg-ctttttgacggtttctttttctgagtgtttataa-aaacctggtcagaatctgatgttatagattctgactcggagtctgaatg 599  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| || |||  ||| ||||||||||||||  ||||||| ||||  ||||||||||    
T  10984289 aattgtgttggtctttttgacgatttctttttctaagtgtttaaaataaatttggacagaatctgatgttgcagattcttactctaagtctgaatg 10984194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 9802127 - 9802196
Alignment:
Q  472 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagt 542  Q
    ||||||||||||||||| |||| |  | ||||||||||||||||||||||||  ||||||||||| |||||    
T  9802127 actgaaggtgagaaaaacacaagattaggggttgaattgtgttggctttttg-tggtttctttttgtgagt 9802196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 520
Target Start/End: Original strand, 16033134 - 16033180
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttt 520  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||    
T  16033134 tgaaggtgagaaaaacacaagaagaggggttgaattgtgttggcttt 16033180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 16557574 - 16557525
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  16557574 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 16557525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 16608088 - 16608137
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  16608088 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 16608137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 599
Target Start/End: Original strand, 17916931 - 17917050
Alignment:
Q  477 aggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgt-tat 575  Q
    |||||||||||| |||| |||| ||||||||||||||||||| ||||  || |||||||||  |||||||    |||||||||||| |||||| || |      
T  17916931 aggtgagaaaaacacaagaagatgggttgaattgtgttggctatttg-tggcttctttttcaaagtgttt---gaaacctggtcaggatctgaggtatgc 17917026  T
Q  576 agattctgactcggagtctgaatg 599  Q
    |||||||||||| |||| ||||||    
T  17917027 agattctgactcagagtatgaatg 17917050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 573
Target Start/End: Complemental strand, 19843334 - 19843294
Alignment:
Q  532 tttttctgagtgtttataaaaacctggtcagaatctgatgtt 573  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19843334 tttttctgagtgtttataaaa-cctggtcagaatctgatgtt 19843294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 33604099 - 33604147
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  33604099 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 33604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 9064520 - 9064594
Alignment:
Q  189 ataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaa 263  Q
    |||||||||||||| || | ||| |||||||| |||| ||  ||||| ||||||||||| ||||| |||||||||    
T  9064520 ataccatcttcaatgatgttccaaagttcatcttcaacaccaatgatatgactatacatcttacttttccaccaa 9064594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 9761734 - 9761803
Alignment:
Q  472 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagt 542  Q
    ||||||||||||||||| |||| | ||  ||||||||||||||| |||||||  ||||||||||| |||||    
T  9761734 actgaaggtgagaaaaaaacaagatgagtggttgaattgtgttgactttttg-tggtttctttttgtgagt 9761803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 13263017 - 13263071
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||||||||||||||||| | |||||||| | |||| |||||||||    
T  13263017 gctctgataccaactgaaggtgagaaacacacaataaggatggttcaattgtgtt 13263071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 18440570 - 18440624
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  18440570 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 18440624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 13027927 - 13027866
Alignment:
Q  461 ctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||| ||||||| ||||||||||||||| |||| |||   |||||||||||||| |||||||    
T  13027927 ctctgataccaattgaaggtgagaaaaacacaagaagggaggttgaattgtgtttgcttttt 13027866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 13138889 - 13138840
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  13138889 tgaaggtgagaaaaacacaagaagagggggttgaattgtgttggcttttt 13138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 9e-48; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 642 - 882
Target Start/End: Original strand, 22747771 - 22748011
Alignment:
Q  642 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactct 740  Q
    |||||||||| ||||||||  |||| ||| |  |||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||| ||       
T  22747771 agagaaagcagacacaaagcgattt-atattggttcctcccataacacaagagtagtccagtccccttgcacttccaagggatttcactataataacata 22747869  T
Q  741 ggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactttttgattaagcacaactgcttaagacttcctg 840  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |   ||||||||||||||||||||||||||     
T  22747870 ggattacaaatttctcaaggactcttccaagagacttctcaatgctcaagcacaactgcaagagacttctaacttaagcacaactgcttaagacttcctc 22747969  T
Q  841 ctataaggcactacctaaagactttctgctcaaggacaactc 882  Q
    ||  | | | ||||||||||||||  |||||||||| |||||    
T  22747970 ctccaggactctacctaaagacttcttgctcaaggataactc 22748011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 474 - 808
Target Start/End: Original strand, 18303561 - 18303892
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaaggg----ttgaattgtgttggc-tttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctg 568  Q
    ||||||||||||||| ||| |||||||||    || |||||||||||| ||||||||| ||||||||||| |||||| |||| ||||||  || ||| ||    
T  18303561 tgaaggtgagaaaaacaca-taagaagggaaggttaaattgtgttggcctttttgacgttttctttttctaagtgttaataacaacctgtacaaaatttg 18303659  T
Q  569 atgttatagattctgactcggagtctgaatgtatgcagtagaaa-acggaactcaaagataaagagtcagagagagagaaagcatacacaaagaaatttt 667  Q
    |||||  |||||| ||||| |||||||||||    ||   |||| ||  ||| |||||||||||||| ||| ||||||||  |||||| |||| |||||     
T  18303660 atgttgcagattccgactcagagtctgaatg----caacggaaatacataacacaaagataaagagtaagatagagagaagacatacataaagcaattt- 18303754  T
Q  668 atactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactctt 766  Q
    ||| |  |||||||||||||||||||||||   ||| |||||  ||||| ||| |||||||||||||||||||    |||||| ||| |||||||| |      
T  18303755 atattggttcctcccataacacatgagtagccgagtccccttatacttctaagggatttcactataatcactc----ttacaacttgctcaaggacacaa 18303850  T
Q  767 ccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    |||||||||||||   |||||||| |||| | ||||| ||||    
T  18303851 ccaagagacttctttttgctcaagcacaattgcaagagactt 18303892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 474 - 779
Target Start/End: Complemental strand, 12063555 - 12063247
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaaggg--ttgaattgtgttggc---tttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctg 568  Q
    ||||||||||||||| |||  ||||||||  |||||||||||||||   ||||||||| ||||||||||| |||||| |||| |||||||  ||||||||    
T  12063555 tgaaggtgagaaaaacacac-aagaagggggttgaattgtgttggcgtctttttgacgttttctttttcttagtgttaataacaacctggatagaatctg 12063457  T
Q  569 atgttatagattctgactcggagtctgaatgtatgcagt-agaaaacggaactcaaagataaagagtcagagagagag--aaagcatacacaaagaaatt 665  Q
    ||||| | |||||||| || ||||||||    |||||||  |||  |  ||| |||| ||||| ||||||||||||||  ||| || |||||||  || |    
T  12063456 atgttgtggattctgattcagagtctga----atgcagtgggaatgcataacacaaaaataaaaagtcagagagagagaaaaaacaaacacaaaccaa-t 12063362  T
Q  666 ttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactc 764  Q
    |||| |   || || ||| |||||| ||||| | |||||| ||||||||| |||| |||||||||||||||||||| |||||||| ||  |||||||| |    
T  12063361 ttattccggtttctgccacaacacaggagtactccagtcctcttgcactttcaagggatttcactataatcactctagattacaacttactcaaggacac 12063262  T
Q  765 ttccaagagacttct 779  Q
      |||| ||||||||    
T  12063261 aaccaaaagacttct 12063247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 622 - 778
Target Start/End: Original strand, 9823621 - 9823776
Alignment:
Q  622 aaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagc 720  Q
    |||||||||||| ||||||||||  ||||| ||| |||  |||||||||||  ||||||||| ||||||  |||||| ||  ||| |||||||| ||||     
T  9823621 aaagataaagagacagagagaga--aagcagacataaaacaattttatactgattcctcccacaacacagaagtagtccaacccccttgcactttcaagg 9823718  T
Q  721 gatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    ||||||||||| ||||| |  |||||||| ||| |||||||| |||||||||||||||    
T  9823719 gatttcactatcatcacacatgattacaaattgctcaaggacacttccaagagacttc 9823776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 777
Target Start/End: Complemental strand, 19570385 - 19570247
Alignment:
Q  640 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcact 738  Q
    ||||||||||||   |||||| ||||||||| |  ||||||||| |||| | ||||||| ||||| | |||||||| |||  ||||||||||||||||||    
T  19570385 agagagaaagcaggaacaaaggaattttatatttgttcctcccacaacagaggagtagtccagtctcattgcactttcaatggatttcactataatcact 19570286  T
Q  739 ctggattacaagttgttcaaggactcttccaagagactt 777  Q
    ||  ||||||| ||| |||||||  ||||||||||||||    
T  19570285 ctaaattacaaattgctcaaggagacttccaagagactt 19570247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 665 - 790
Target Start/End: Complemental strand, 24495249 - 24495125
Alignment:
Q  665 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 763  Q
    ||||||||  ||||||||| |||||| ||||||| ||||||| |||||||| |||| ||||||| ||||||| | ||| ||||||| ||| ||| |||||    
T  24495249 tttatactggttcctcccacaacacaagagtagtccagtccccttgcactttcaagggatttcattataatctcactg-attacaa-ttgctcagggact 24495152  T
Q  764 cttccaagagacttctcaatgctcaag 790  Q
    |||||||||||||||  ||||||||||    
T  24495151 cttccaagagacttccaaatgctcaag 24495125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 707 - 790
Target Start/End: Complemental strand, 24885931 - 24885850
Alignment:
Q  707 ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||| | |||||| |  ||||||||||||||||||||||||    
T  24885931 ttgcacttccaagggatttcactataatcactct-gattacaatttgcttaaggacac-accaagagacttctcaatgctcaag 24885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 726 - 797
Target Start/End: Original strand, 12046681 - 12046752
Alignment:
Q  726 cactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaact 797  Q
    ||||||||||||||| |||| | | ||||||||||||| || |||||||||||||||| |||||| ||||||    
T  12046681 cactataatcactctagattgctaattgttcaaggactttttcaagagacttctcaatactcaagcacaact 12046752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 819 - 918
Target Start/End: Complemental strand, 19570233 - 19570134
Alignment:
Q  819 cacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    |||||||||| |||||||| |||| || | ||| ||||||||||||  | ||| ||||||||||||||| |||||| ||| | |||||| ||||||||||    
T  19570233 cacaactgctcaagacttcttgctttaggacaccacctaaagacttcttactcgaggacaactccaagaaacttccctttgcataagcacaactgcttaa 19570134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 675 - 770
Target Start/End: Complemental strand, 24515576 - 24515482
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaa 770  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||||| || ||||||||||||   ||  ||||||| ||| ||||||||||||||||    
T  24515576 ttcctcccacaacacaggagtagtccagtccctagcacttccaagggagttcactataatcttactaaattacaa-ttgctcaaggactcttccaa 24515482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 703 - 789
Target Start/End: Original strand, 28759885 - 28759970
Alignment:
Q  703 tcccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaa 789  Q
    ||||||| |||||||||  ||||||||||||||| ||| |||||||| ||| | |||||| |  |||||||||||||||||||||||    
T  28759885 tcccttgtacttccaaggaatttcactataatcaatcttgattacaatttgcttaaggacac-accaagagacttctcaatgctcaa 28759970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 808
Target Start/End: Original strand, 24163080 - 24163196
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||| || ||| || ||| | ||| ||||||||  | |||| |||||||||||||||||||    
T  24163080 gagtagtccagtccccttgcacttccaatggatttcactataaccaatcttgagtacgatttgctcaaggaca-taccaatagacttctcaatgctcaag 24163178  T
Q  791 aacaactacaagatactt 808  Q
     |||||| ||||| ||||    
T  24163179 tacaactgcaagagactt 24163196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 33021842 - 33021893
Alignment:
Q  471 aactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  33021842 aactgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 33021893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 9088174 - 9088223
Alignment:
Q  474 tgaaggtgagaaaaatacaataag-aagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  9088174 tgaaggtgagaaaaacacaagaaggaagggttgaattgtgttggcttttt 9088223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 788
Target Start/End: Complemental strand, 22797798 - 22797701
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctca 788  Q
    ||||||| ||||||| |||||||| |||| |||||||||||| ||||    |||||||| ||  ||||||||  |||||||||||||||| |||||||    
T  22797798 gagtagtccagtccccttgcacttacaagggatttcactatagtcacaactgattacaaatttctcaaggacaattccaagagacttctctatgctca 22797701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 19642764 - 19642716
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| |||| ||| |||||||||||||||||||    
T  19642764 tgaaggtgagaaaaacacaagaagaggggatgaattgtgttggcttttt 19642716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 21199961 - 21199905
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  21199961 ataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 21199905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 31589936 - 31589888
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| ||||||||  ||||||||||||||| |||||||    
T  31589936 tgaaggtgagaaaaacacaataaggggggttgaattgtgttagcttttt 31589888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 599
Target Start/End: Original strand, 12046483 - 12046574
Alignment:
Q  506 aattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgt-tatagattctgactcggagtctgaatg 599  Q
    ||||||||||||||||| |  |||| ||||||||||||||||  |||||||||||| || |||| || |  |||||||||||| |||||||||||    
T  12046483 aattgtgttggcttttt-atagtttatttttctgagtgttta--aaaacctggtcataacctgacgtatgcagattctgactcagagtctgaatg 12046574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 918
Target Start/End: Original strand, 18303908 - 18303974
Alignment:
Q  851 ctacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    |||||||| |||||| || |||||||||||||||||| ||||||  || ||||||| |||||||||||    
T  18303908 ctacctaaggacttt-tgttcaaggacaactccaagacacttccccttgcttaagcgtaactgcttaa 18303974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 13533162 - 13533216
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  13533162 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 13533216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 17456607 - 17456661
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  17456607 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 17456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 689 - 770
Target Start/End: Original strand, 22820779 - 22820860
Alignment:
Q  689 catgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaa 770  Q
    ||||| |||| |||||| |||||||||||||| |||||| |||||||| | || |||||||| |||||||| ||| |||||||    
T  22820779 catgactagtccagtcctcttgcacttccaagagatttcgctataatctcactagattacaa-ttgttcaaagacacttccaa 22820860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 6513373 - 6513324
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||| ||||||||||||||||||||    
T  6513373 tgaaggtgagaaaaacacaagaaggaggggttgaattgtgttggcttttt 6513324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 19570549 - 19570501
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||||||||| ||| | |||||||||| |||||||||||    
T  19570549 ctgaaggtgagaaaaatacaagaagga-ggttgaattgagttggcttttt 19570501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 616 - 894
Target Start/End: Complemental strand, 12440037 - 12439759
Alignment:
Q  616 gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcc-cttgcactt 714  Q
    |||| ||||||||||||| || | | ||||||| || | |||||  |||||||||||  ||||||||| ||  || ||||| | || ||| |||||||||    
T  12440037 gaacacaaagataaagagacaaaaa-agagaaaacagagacaaaacaattttatactagttcctcccacaattcaggagtactccaatcctcttgcactt 12439939  T
Q  715 ccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt-tttga 813  Q
    ||||| |||||||||||||||||| ||||||||||  || ||||| || ||| ||||||||||||||||||||||| |||||| ||||| ||||   ||     
T  12439938 ccaagggatttcactataatcactatggattacaaaatgctcaagcacactttcaagagacttctcaatgctcaagcacaactgcaagagacttcaatgc 12439839  T
Q  814 ttaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttcc 894  Q
    ||||||||| || ||||||||||||| || |||| ||||||||||| | ||| |||||||| |||||||||||| ||||||    
T  12439838 ttaagcacacctacttaagacttccttctctaagacactacctaaata-tttatgctcaagaacaactccaagagacttcc 12439759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 598
Target Start/End: Complemental strand, 9757370 - 9757307
Alignment:
Q  535 ttctgagtgtttataaaaacctggtcagaatctgatgttatagattctgactcggagtctgaat 598  Q
    |||| ||||||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||    
T  9757370 ttctaagtgtttataaaaatttggtcagaatctgatgttacagattctgactcagagtctgaat 9757307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 665 - 778
Target Start/End: Complemental strand, 19019914 - 19019801
Alignment:
Q  665 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 763  Q
    ||||||||  ||||||||| || ||||||||||| ||||||| ||||||||  |||  |||||||||||||| | || |||||| | ||| |||||||||    
T  19019914 tttatactggttcctcccacaatacatgagtagtccagtccccttgcacttttaaggaatttcactataatctcactagattacca-ttgctcaaggact 19019816  T
Q  764 cttccaagagacttc 778  Q
    |||||||||||||||    
T  19019815 cttccaagagacttc 19019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 623 - 748
Target Start/End: Complemental strand, 9757278 - 9757155
Alignment:
Q  623 aagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagt-cccttgcacttccaagcg 721  Q
    ||||||||||||||||||||||  |  |||| |||||| ||||| | |||  ||||||||| |||||||||||||| |||| |||||| ||||||||  |    
T  9757278 aagataaagagtcagagagagaaga--catagacaaagcaattt-acactggttcctcccacaacacatgagtagtccagtccccttgaacttccaatag 9757182  T
Q  722 atttcactataatcactctggattaca 748  Q
     ||||||| |||||||||| |||||||    
T  9757181 ctttcactttaatcactcttgattaca 9757155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 12440153 - 12440083
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagtgtt 545  Q
    ||||||||||||||| |||| |||  ||||||||||||||||||||||||  ||||||||||||| ||||||    
T  12440153 tgaaggtgagaaaaacacaaaaagtggggttgaattgtgttggctttttg-tggtttctttttcttagtgtt 12440083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 27857974 - 27858029
Alignment:
Q  467 taccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  27857974 taccaactgaaggtgagaaaaacacaagaaggagggttgaattgtgttagcttttt 27858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 23975729 - 23975674
Alignment:
Q  467 taccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||||||||| |||| |||  ||||||||||||||| |||||||    
T  23975729 taccaactgaaggtgagaaaaacacaagaaggggggttgaattgtgttagcttttt 23975674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 9345960 - 9346014
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| |||| |||||||||||||||||| |||| ||| ||||||||||||||||    
T  9345960 gctctgatacaaactgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 9346014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 790
Target Start/End: Complemental strand, 12669884 - 12669760
Alignment:
Q  665 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 763  Q
    ||||||||  ||||||||| ||||||  |||||| ||||||| |||||||||||||  |||||||||||||  |  | ||||| || |||||||||||||    
T  12669884 tttatactggttcctcccacaacacaatagtagtccagtccccttgcacttccaaggaatttcactataatttc-attgatta-aaattgttcaaggact 12669787  T
Q  764 cttccaagagacttctcaatgctcaag 790  Q
    ||| ||| |||||||  ||||||||||    
T  12669786 ctttcaaaagacttccaaatgctcaag 12669760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 22153020 - 22153069
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  22153020 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 22153069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 721 - 778
Target Start/End: Original strand, 31910762 - 31910818
Alignment:
Q  721 gatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    |||||| ||||||||||| | |||||||| |||||||||||||||||||| |||||||    
T  31910762 gatttctctataatcactattgattacaa-ttgttcaaggactcttccaatagacttc 31910818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 46181733 - 46181690
Alignment:
Q  471 aactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    |||||||||||||||||| |||| |||| |||||||||||||||    
T  46181733 aactgaaggtgagaaaaacacaagaagaggggttgaattgtgtt 46181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 22601471 - 22601413
Alignment:
Q  465 aataccaactgaaggtgagaaaaatacaataaga-agggttgaattgtgttggcttttt 522  Q
    |||||| ||||||||||||||||| |||| ||||  ||||||||||||||| |||||||    
T  22601471 aatacccactgaaggtgagaaaaacacaaaaagagggggttgaattgtgttagcttttt 22601413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 23917082 - 23917144
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||||||||||||| ||||| |||| |||   |||||||||||||| |||||||    
T  23917082 gctctgataccaactgaaggtgataaaaacacaagaagggaggttgaattgtgttagcttttt 23917144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 518
Target Start/End: Complemental strand, 25449483 - 25449426
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggct 518  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||    
T  25449483 gctctgataccaattgaaggtgagaaaaacacaagaag-ggggttgaattgtgttggct 25449426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 24155194 - 24155117
Alignment:
Q  186 tcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaa 263  Q
    ||||||||||||||||| |||| ||  ||||| | |||||||   ||||||||||||||||| || || |||||||||    
T  24155194 tcaataccatcttcaatgatattccgaagttcttaatcaatatcaatgatgtgactatacatcttgcttttccaccaa 24155117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 636 - 814
Target Start/End: Complemental strand, 2401 - 2222
Alignment:
Q  636 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 734  Q
    ||||||||||| |||| ||| ||||||||||||||||  ||||||||| |||| |||||||||  |||||| ||||||||||||  ||||||||||||||    
T  2401 agagagagagagagcagacaaaaagaaattttatactggttcctcccagaacatatgagtagtctagtccccttgcacttccaaaagatttcactataat 2302  T
Q  735 cactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactttttgat 814  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| | |||  ||||| |||||| ||| | |||| |||||    
T  2301 cactctggattacaaattgctcaaggactcttccaagagacttattaattgtcaagcacaactgcaaaagacttcttgat 2222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 405 - 521
Target Start/End: Complemental strand, 2776 - 2659
Alignment:
Q  405 tttttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaa-gggt 503  Q
    ||||||||||| ||||||  | | ||| || ||||||||||||  || | ||||| |||| ||||||||||||||||||||||| |||  ||||| ||||    
T  2776 tttttctcactggatctttatctgtggtacagttaagtggcagagcatataccgtactctgataccaactgaaggtgagaaaaacacatgaagaaggggt 2677  T
Q  504 tgaattgtgttggctttt 521  Q
    ||||||||||||||||||    
T  2676 tgaattgtgttggctttt 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 816 - 894
Target Start/End: Complemental strand, 2248 - 2170
Alignment:
Q  816 aagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttcc 894  Q
    ||||||||||||  |||||||| || | || | ||||||||||||||||  |||||||||| || ||||||| ||||||    
T  2248 aagcacaactgcaaaagacttcttgatctaggacactacctaaagacttcttgctcaaggaaaattccaagagacttcc 2170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 616 - 894
Target Start/End: Complemental strand, 22317478 - 22317199
Alignment:
Q  616 gaactcaaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcactt 714  Q
    |||| ||||||||||||| |  |  ||||||||| | |||||||  |||||||||||  ||||||| | ||  || ||||||| ||||| | ||||||||    
T  22317478 gaacacaaagataaagagacgaaacgagagaaagtagacacaaaacaattttatactggttcctcctacaatccaggagtagtccagtctcattgcactt 22317379  T
Q  715 ccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt-tttga 813  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||| || |||||||  |||||||| |||  |  |||| |||| | ||     
T  22317378 ccaagggatttcactataatcactctggattacaaattgctcaaggacacttccaggacacttctctttgctcaagtacagttgtaagagacttctatgc 22317279  T
Q  814 ttaagcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttcc 894  Q
    |||||||||||| ||||||| |||||||| || | ||||| | |||| | |||||||||||||||||||||||| ||||||    
T  22317278 ttaagcacaacttcttaagaattcctgctctaggacactatccaaagtc-ttctgctcaaggacaactccaagagacttcc 22317199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 433 - 763
Target Start/End: Original strand, 8910812 - 8911134
Alignment:
Q  433 acggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttct 532  Q
    ||||||||||||||   || ||| |||| ||| |||||||||  |||||||||||| |||| | |  ||||||||||||||||||||||| | |||||||    
T  8910812 acggttaagtggcaaagcatagatcgtgttctgataccaacttgaggtgagaaaaacacaaaagg--gggttgaattgtgttggcttttt-atggtttct 8910908  T
Q  533 ttttctgagtgtttataaaaacctggtcagaatctgatgt-tatagattctgactcggagtctgaatgtatgcag-tagaaaacggaactcaaagataaa 630  Q
    |||||||| ||||   ||||||||||||| |||||||||| |  | |||||||||| |||| | |||||| |||| || ||||   ||| |||| ||||     
T  8910909 ttttctgaatgtt--gaaaaacctggtcaaaatctgatgtatgaatattctgactcagagtgttaatgta-gcagataaaaaaaaaaacacaaatataag 8911005  T
Q  631 gagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtcccttgcacttccaagcgatttcacta 730  Q
    |||||  |||||||||||| | ||||||   || ||||||||  ||||||||| |||||| ||||| | ||| ||||| |||||| ||| ||||||||||    
T  8911006 gagtc--agagagagaaagtagacacaa--taactttatactggttcctcccacaacacaggagtaatccagccccttacacttctaagggatttcacta 8911101  T
Q  731 taatcactctggattacaagttgttcaaggact 763  Q
    ||||||| |  |||||||| ||| || ||||||    
T  8911102 taatcacacaagattacaaattgctctaggact 8911134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 675 - 790
Target Start/End: Original strand, 18445318 - 18445432
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||| |||||  |||||||| | | | ||||||| ||| |||||||||||||||||||    
T  18445318 ttcctcccagaacacatgagtagtccagtcctcttgcacttccaagggattttcctataatctcacag-attacaa-ttgctcaaggactcttccaagag 18445415  T
Q  774 acttctcaatgctcaag 790  Q
    |||||  ||||||||||    
T  18445416 acttccaaatgctcaag 18445432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 638 - 790
Target Start/End: Complemental strand, 22223554 - 22223402
Alignment:
Q  638 agagagagaaagcatacacaaaga-aattttatactctttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataatc 735  Q
    ||||||||||||   ||||||| | |||||||||||  ||||||||| |||||| |||||||  ||||| |||||||||||||| |||||||||||||||    
T  22223554 agagagagaaagagcacacaaaaacaattttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggatttcactataatc 22223455  T
Q  736 actctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
     | |   ||||||| ||| | ||||||||||||| |||||||| |||||||||||    
T  22223454 tcac-atattacaa-ttgctgaaggactcttccacgagacttcccaatgctcaag 22223402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 18777553 - 18777480
Alignment:
Q  500 gggttgaattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgtt 573  Q
    |||||||||||||| ||  |||||||   |||||||||| ||||||||||||||| ||||||||||||||||||    
T  18777553 gggttgaattgtgtgggtcttttgacaaattctttttctaagtgtttataaaaacttggtcagaatctgatgtt 18777480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 21810819 - 21810747
Alignment:
Q  450 cacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||| ||||||||| |||||||||||||||||||||||| | || |||  |||||||||||||||| ||||||    
T  21810819 cacaaaccgtgctcaaataccaactgaaggtgagaaaaacataagaaggggggttgaattgtgttgacttttt 21810747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 713 - 808
Target Start/End: Complemental strand, 18777339 - 18777245
Alignment:
Q  713 ttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
    ||||||| |||||||||||||||||| || ||||||| ||| |||||||| |  |||||||| ||||||||||||||  |||||| ||||| ||||    
T  18777339 ttccaagggatttcactataatcactttgaattacaacttgctcaaggacac-accaagagatttctcaatgctcaaacacaactgcaagagactt 18777245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 692 - 810
Target Start/End: Complemental strand, 39981285 - 39981166
Alignment:
Q  692 gagtagttcagtcc-cttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| |||||| ||||||||||||||  |||||||||||||||    |||||||||  || ||||||||  || |||||||||||||  ||||||||    
T  39981285 gagtagtccagtccacttgcacttccaaggaatttcactataatcataaaggattacaaaatgctcaaggacattttcaagagacttctctttgctcaag 39981186  T
Q  791 aacaactacaagatactttt 810  Q
     |||||| ||||| ||||||    
T  39981185 cacaactgcaagacactttt 39981166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 852 - 918
Target Start/End: Complemental strand, 39981151 - 39981085
Alignment:
Q  852 tacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||||||||||||| |||| ||| ||||||||||||| ||||||  || |||||||||||||||||||    
T  39981151 tacctaaagacttcctgcccaaagacaactccaagaaacttcccattgcttaagcataactgcttaa 39981085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 790
Target Start/End: Complemental strand, 21589095 - 21588981
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccctt-gcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagag 773  Q
    ||||||||| |||||| ||||||| ||||| ||| ||||||||||  ||||||||||||||| | |   ||||||| ||  |||| ||||||| ||||||    
T  21589095 ttcctcccaaaacacaggagtagtccagtctctttgcacttccaaaggatttcactataatctcac-atattacaa-tttatcaatgactctttcaagag 21588998  T
Q  774 acttctcaatgctcaag 790  Q
    |||||||||||||||||    
T  21588997 acttctcaatgctcaag 21588981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 17527308 - 17527246
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||||||||||||||||||| | || |||  ||||||||||||||| |||||||    
T  17527308 gctctgataccaactgaaggtgagaaaaacaaaagaaggcgggttgaattgtgttagcttttt 17527246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 17527556 - 17527492
Alignment:
Q  186 tcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacatttt 250  Q
    |||| ||||||||||| |||||||||| |||| ||||| || | |||||| ||||||||||||||    
T  17527556 tcaacaccatcttcaagaatatcccattgttcttcatctatgcccatgatatgactatacatttt 17527492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 14905256 - 14905193
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 522  Q
    ||||||||||||| |||||||| |||||| |||| |||  ||| ||||||||||||||||||||    
T  14905256 gctctaataccaattgaaggtgggaaaaacacaacaaggggggattgaattgtgttggcttttt 14905193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 762
Target Start/End: Original strand, 19052737 - 19052807
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac 762  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||| |  |||||||| ||| ||||||||    
T  19052737 gagtagtccagtccccttgcacttccaagggatttcactataatcacacaagattacaa-ttgctcaaggac 19052807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 476 - 522
Target Start/End: Original strand, 13026985 - 13027031
Alignment:
Q  476 aaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||| |||| |||  |||||||||||||||||||||||    
T  13026985 aaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 13027031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 14836953 - 14836899
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  14836953 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 14836899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 522
Target Start/End: Complemental strand, 14903327 - 14903275
Alignment:
Q  469 ccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||| |||||||    
T  14903327 ccaactgaaggtgagaaaaatacaagaag-cgggttcaattgtgttagcttttt 14903275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 24628814 - 24628765
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagg-gttgaattgtgttggcttttt 522  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| |||||||    
T  24628814 tgaaggtgagaaaaatacaagaaggaggagttgaattgtgttagcttttt 24628765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 685 - 893
Target Start/End: Complemental strand, 26654087 - 26653877
Alignment:
Q  685 aacacatgagtagttcagt-cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaat 783  Q
    ||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||  |    
T  26654087 aacacataagtagttaagtacccttgcacttccaagtgatttcactataatcactttggattacaaattggtcaaggacacttccaagagacttctc-tt 26653989  T
Q  784 gctcaagaacaactacaagatactt-tttgattaagcacaactgcttaagacttcctgctataaggcactacctaaagactttc-tgctcaaggacaact 881  Q
    ||||||| |||||| |   | ||||  ||  | ||||||||||||| || |||||||| |||| | |||||||||||||||| | | |||||||| ||||    
T  26653988 gctcaagcacaactgctcaaaacttccttcctcaagcacaactgctcaatacttcctgatataggacactacctaaagacttccttactcaaggaaaact 26653889  T
Q  882 ccaagatacttc 893  Q
    |||||| |||||    
T  26653888 ccaagagacttc 26653877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 662 - 918
Target Start/End: Original strand, 8684985 - 8685242
Alignment:
Q  662 aattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaagg 760  Q
    ||||||||| |  ||||||||| |||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||| |  ||||| ||  || |||||     
T  8684985 aattttatagtggttcctcccacaacacaggagtagtccagtccccttgcacttccaagggatttcactataatcacacatgattataaaatgctcaagc 8685084  T
Q  761 actcttccaagagacttctcaatgctcaagaacaactacaagatact-ttttgattaagcacaactgcttaagacttcctgctataaggcactacctaaa 859  Q
    |||||||||||| |||||||  |||||||  |||| | ||||| |||  | |  ||||||||| |||||||||| ||  |||| ||   |||||||||||    
T  8685085 actcttccaagaaacttctctttgctcaaccacaattgcaagagactcctatacttaagcacacctgcttaaga-tttatgctctagaacactacctaaa 8685183  T
Q  860 gactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||||| ||||| |||||||||||||| | |||||| ||| |||||||| ||||||||||    
T  8685184 gacttcctgctaaaggacaactccaatagacttccctttgcttaagcacaactgcttaa 8685242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 636 - 778
Target Start/End: Complemental strand, 26655438 - 26655295
Alignment:
Q  636 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 734  Q
    ||||||||||| || | |||||||| |||||||||||  ||||||||| |||||| |||| || ||||||| |||||||| |||| ||||||||||||||    
T  26655438 agagagagagagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggatttcactataat 26655339  T
Q  735 cactctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    ||| |  |||||||| |||| ||||||| |||||||||||||||    
T  26655338 cacacatgattacaaattgtccaaggacccttccaagagacttc 26655295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 636 - 779
Target Start/End: Complemental strand, 17418322 - 17418178
Alignment:
Q  636 agagagagagaaagcatacaca-aagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataa 733  Q
    ||||||||||| || ||| ||| ||||||||||||| |  ||||||||| |||||| ||||||| ||||||| |||| ||||||||  ||||||||||||    
T  17418322 agagagagagagagaatagacataagaaattttatattggttcctcccacaacacaggagtagtccagtccccttgcgcttccaaggaatttcactataa 17418223  T
Q  734 tcactctggattacaagttgttcaaggactcttccaagagacttct 779  Q
    ||||||| |||||||| ||| ||||||||||||  |||||||||||    
T  17418222 tcactcttgattacaa-ttgctcaaggactcttttaagagacttct 17418178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 642 - 918
Target Start/End: Complemental strand, 16153066 - 16152791
Alignment:
Q  642 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactct 740  Q
    |||||||||| ||  |||| |||||||||||  ||||| ||| |||| | ||||||| || |||| || |||||| ||| |||| |||||||||||||||    
T  16153066 agagaaagcagacgtaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcactct 16152967  T
Q  741 ggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt-tttgattaagcacaactgcttaagacttcct 839  Q
    | ||||||| ||| |||||||| |||| |  | |||||||  |||||||| |||||| |||||  ||| | || ||||||||| |||||||| |||| ||    
T  16152966 gaattacaaattgctcaaggacacttcta--atacttctctttgctcaagcacaactgcaagaggcttctatgcttaagcacacctgcttaaaactt-ct 16152870  T
Q  840 gctataaggcactacctaaagactt-tctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||| || | |||||||||||||||| | ||| |||||| |||||||||| |||| | ||| | |||||| |||| |||||    
T  16152869 gctctaggacactacctaaagacttctttgc-caaggaaaactccaagagactttcctttgcctaagcacaacttcttaa 16152791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 25917444 - 25917343
Alignment:
Q  321 tcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatatttttctcactagatc 420  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||||  |||| ||  | ||||| |||| |||||||||||    
T  25917444 tcaactttgggagtgttgtaatcatagtagacggctgcatggtggtttcttcctgaagtgctaggttcattgtcataagacatgttttcctcactagatc 25917345  T
Q  421 tt 422  Q
    ||    
T  25917344 tt 25917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 675 - 762
Target Start/End: Original strand, 21822978 - 21823066
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggac 762  Q
    ||||||||| |||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||  ||| ||||||||    
T  21822978 ttcctcccacaacacaggagtagtccagtcccattgcacttccaagggatttcactataatcactctcgattacagcttgctcaaggac 21823066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 628 - 777
Target Start/End: Original strand, 21823789 - 21823939
Alignment:
Q  628 aaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaa-gcgattt 725  Q
    ||||||||||||||||||||  |||||||| |  ||||| ||||   ||||||||| |||||| ||||||| || |||| ||  |||| ||| | |||||    
T  21823789 aaagagtcagagagagagaagacatacacataacaattt-atacatgttcctcccacaacacaggagtagtccaatccccttatactttcaaagagattt 21823887  T
Q  726 cactataatcactctggattacaagttgttcaaggactcttccaagagactt 777  Q
    |||||||||||||||||||||||| | | |||||||| |  |||||||||||    
T  21823888 cactataatcactctggattacaactcgctcaaggacacaaccaagagactt 21823939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 778
Target Start/End: Original strand, 19563955 - 19564068
Alignment:
Q  665 tttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggact 763  Q
    ||||||||  ||||||||| ||||||||||| || || |||| ||||||||||||| || |||| ||||||||||   |||||||| ||  | |||||||    
T  19563955 tttatactggttcctcccacaacacatgagtggtccaatccccttgcacttccaagggaattcattataatcactactgattacaa-ttactgaaggact 19564053  T
Q  764 cttccaagagacttc 778  Q
    |||||||||||||||    
T  19564054 cttccaagagacttc 19564068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 704 - 778
Target Start/End: Complemental strand, 21770326 - 21770253
Alignment:
Q  704 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttc 778  Q
    |||||||||||| ||| |||||||||||||||   || |||||||| ||| ||||||||||||||||||||||||    
T  21770326 cccttgcacttctaagagatttcactataatcttactagattacaa-ttgctcaaggactcttccaagagacttc 21770253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 599
Target Start/End: Complemental strand, 24216990 - 24216868
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctgatgtt 573  Q
    ||||||| || |||| |||| |||  |||||||||||||||||||||||   |||||||||||||||||| ||| ||| | ||||||||||||||| |      
T  24216990 tgaaggtaagtaaaacacaagaaggggggttgaattgtgttggcttttt---ggtttctttttctgagtg-ttaaaaagaactggtcagaatctga-gaa 24216896  T
Q  574 at--agattctgactcggagtctgaatg 599  Q
    ||  |||||||||||| |||||||||||    
T  24216895 atgcagattctgactcagagtctgaatg 24216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 636 - 790
Target Start/End: Complemental strand, 27766267 - 27766114
Alignment:
Q  636 agagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataat 734  Q
    ||||||||||| ||||||||||| || | ||||||||  ||||||| | ||  ||  |||||| ||||||| || ||||||||||  |||||||||||||    
T  27766267 agagagagagagagcatacacaa-gacaatttatacttgttcctcctacaaaccagaagtagtccagtccccttacacttccaaggaatttcactataat 27766169  T
Q  735 cactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||| || |||||||| ||| ||||||||  || ||| |||||||  ||||||||||    
T  27766168 cacactagattacaa-ttgctcaaggacaatttcaaaagacttccaaatgctcaag 27766114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 24851579 - 24851529
Alignment:
Q  472 actgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  24851579 actgaaggtgagaaaaacacaagaaggagggttgaattgtgtttgcttttt 24851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 22312765 - 22312716
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  22312765 ctgaaggtgagaaaaacaaaatagggagggttgaattgtgttggcttttt 22312716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 24575218 - 24575275
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataa-gaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| || |||||||||||||||||| |||||||    
T  24575218 ataccaattgaaggtgagaaaaacacaagaatgaagggttgaattgtgttagcttttt 24575275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 40780496 - 40780544
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||||||||||    
T  40780496 ataccaattgaaggtgagaaaaacacaagaaggagggttgaattgtgtt 40780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 762
Target Start/End: Original strand, 17435587 - 17435725
Alignment:
Q  622 aaagataaagagtcagagagaga-gaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccctt-gcacttccaag 719  Q
    |||||||||||||| |||||||| ||||| ||||| ||| ||  ||||||||  ||||||| | || ||| ||||| | ||||||||| |||||||||||    
T  17435587 aaagataaagagtctgagagagatgaaag-ataca-aaacaa--tttatactggttcctcctacaaaacaagagtactccagtccctttgcacttccaag 17435682  T
Q  720 cgatttcactataatcactctggattacaagttgttcaaggac 762  Q
     |||||||||||||||| ||| || ||||| ||  ||||||||    
T  17435683 ggatttcactataatcaatcttgaatacaattttctcaaggac 17435725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 22782550 - 22782488
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||| ||||||||| ||||| |||| |||  ||||||||||||||| |||||||    
T  22782550 gctctgataccaattgaaggtgataaaaacacaagaaggggggttgaattgtgttagcttttt 22782488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 779
Target Start/End: Complemental strand, 24216772 - 24216647
Alignment:
Q  655 acaaagaaattttatactctttcctcccataacacatgagtagttcagtccct-tgcacttccaagcgatttcactataatcactctggattacaagttg 753  Q
    |||||| |||||||| ||  || || ||| |||||| ||||||| |||||||  ||||||| |||  | ||| | ||||||||||||| ||||||| |||    
T  24216772 acaaagcaattttattctggtttcttccacaacacaggagtagtccagtccccctgcacttgcaaagggttttaatataatcactctgaattacaaattg 24216673  T
Q  754 ttcaaggactcttccaagagacttct 779  Q
     |||||||| ||||| | ||||||||    
T  24216672 atcaaggacccttcctatagacttct 24216647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 27766479 - 27766406
Alignment:
Q  450 cacagaccgtgctctaataccaactgaaggtgagaaaaatacaataa-gaagggttgaattgtgttggcttttt 522  Q
    |||| ||| |||||| |||||||||||||| ||||||||||||| || | || ||| |||||||||| ||||||    
T  27766479 cacaaaccttgctctgataccaactgaaggggagaaaaatacaagaagggagagtttaattgtgttgacttttt 27766406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 621 - 808
Target Start/End: Original strand, 25067 - 25253
Alignment:
Q  621 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaag 719  Q
    ||||||||||||| |||||||| |  ||||| |||||||  ||||||||| |  ||||||||| || | | ||||||| || |||| |||||||||||||    
T  25067 caaagataaagagacagagagaca--aagcaaacacaaaacaattttatattggttcctcccacaataaaggagtagtccaatccccttgcacttccaag 25164  T
Q  720 cgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
     | |||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |||||||||| |||| | ||||| ||||    
T  25165 gggtttcactataatcactttggattacaaattgctcaaggactcttccaatagacttcttaatgctcaagcacaattgcaagacactt 25253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 70; Significance: 5e-31; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 621 - 797
Target Start/End: Original strand, 382128 - 382305
Alignment:
Q  621 caaagataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaag 719  Q
    |||||||||||||  | ||||||||| |||| |||||||  |||  ||||||  ||||| ||| |||||| ||||||| || |||| ||||| ||| |||    
T  382128 caaagataaagagatatagagagagatagcagacacaaaacaatcatatactagttccttccacaacacaggagtagtccactccccttgcagttctaag 382227  T
Q  720 cgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaact 797  Q
     |||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  382228 agatttcactataatcactcatgattacaaattgctcaaggactcttccaagagacttcttaatgctcaagcacaact 382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 569
Target Start/End: Original strand, 382010 - 382074
Alignment:
Q  502 gttgaattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctga 569  Q
    ||||||||||||||| |||||| | |||||||||||||||||||  ||||||| ||||||||||||||    
T  382010 gttgaattgtgttggttttttg-cagtttctttttctgagtgtt--taaaaacttggtcagaatctga 382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 210595 - 210650
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  210595 ataccaattgaaggtgagaaaaacacaagaagg-gggttgaattgtgttggcttttt 210650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 835 - 893
Target Start/End: Original strand, 382315 - 382373
Alignment:
Q  835 ttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttc 893  Q
    |||||||| || | ||||||||||||||||  |||||||| |||||||||||| |||||    
T  382315 ttcctgctctaggacactacctaaagacttcttgctcaagaacaactccaagagacttc 382373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 638 - 803
Target Start/End: Complemental strand, 18233 - 18067
Alignment:
Q  638 agagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtc-ccttgcacttccaagcgatttcactataatca 736  Q
    ||||| |||||||||| | |||  ||||||||| |  ||||||| | |||| | |||||||  |||| ||||| ||||||||| | ||||||||||||||    
T  18233 agagaaagaaagcatagataaatcaattttatattggttcctcctacaacaaaggagtagtcgagtctccttgtacttccaagaggtttcactataatca 18134  T
Q  737 ctctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaaga 803  Q
    |||||||||| || ||| |||||||||||||||||| ||||||| ||||||||| |||||| |||||    
T  18133 ctctggattaaaaattgctcaaggactcttccaagatacttctctatgctcaagcacaactgcaaga 18067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 640 - 799
Target Start/End: Complemental strand, 30761 - 30601
Alignment:
Q  640 agagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcact 738  Q
    |||||||||||| |||||||  ||||||||| |  ||||||||  || | | ||||||| || |||| ||||||||||||| | |||||||||||| |||    
T  30761 agagagaaagcaaacacaaatcaattttatattggttcctccctcaaaaaaggagtagtccaatccccttgcacttccaaggggtttcactataattact 30662  T
Q  739 ctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactac 799  Q
     |||||||||| ||| ||||||||||||| |  ||||||||||||||||||| ||||||||    
T  30661 ttggattacaaattgctcaaggactcttctagtagacttctcaatgctcaagcacaactac 30601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 10857 - 11048
Alignment:
Q  7 agcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctatg 106  Q
    |||||||||||||||| ||||| ||| |||  ||  | ||||||||||||| ||||| ||| | ||||| | | |||| |||| ||| | ||||||||||    
T  10857 agcacagagattcaaatatggtcttgacagtagacctattgacaatcttcaaatattctgaatgaggtagaacatctataagaattctatgcaccctatg 10956  T
Q  107 atgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatctt 198  Q
    |||||||| ||||| |||||  | ||||||||| |||||||||||||||| || |||| |||||| ||||||  ||| ||||||| ||||||    
T  10957 atgctttccgtagaacttctaatgagcctcagttagactatttctgtcacttgtcatttcttcttcatcaacttcaaactcaatatcatctt 11048  T

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Target: scaffold0062 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 808
Target Start/End: Original strand, 1028 - 1195
Alignment:
Q  642 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtc-ccttgcacttccaagcgatttcactataatcactct 740  Q
    |||||| ||| |||||||  ||||||||| |  ||||||| | ||  || ||||||| ||||| |||| |||||||||| ||||||||||| ||||| |     
T  1028 agagaaggcaaacacaaaacaattttatattggttcctcctacaatccaggagtagtccagtctccttacacttccaagagatttcactatgatcacaca 1127  T
Q  741 ggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaactacaagatactt 808  Q
     |||||||| ||  |||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||    
T  1128 cgattacaaatttctcaaggacacttccaagagacttcgcaatgctcaagcacaactgcaagagactt 1195  T

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Target: scaffold0412 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 656 - 557
Alignment:
Q  192 ccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaa 291  Q
    ||||||| ||||| |||||| |||||||||||||| |  ||||||| |||||| |||||||||||||||||| | | |||||||| || |||||||||||    
T  656 ccatctttaataacatcccagagttcatcatcaatccctatgatgtaactatagattttactcttccaccaagagaactgagtagaatctccattgaaaa 557  T

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Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 92368 - 92267
Alignment:
Q  192 ccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaa 291  Q
    ||||||| ||||| |||||| ||||||||||||||    ||||||| |||||||||||| ||||| |||||| | | ||||| ||||| |||||||||||    
T  92368 ccatctttaataacatcccagagttcatcatcaatctatatgatgtaactatacattttgctcttgcaccaagataactgaggagcatctccattgaaaa 92269  T
Q  292 at 293  Q
    ||    
T  92268 at 92267  T

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Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 788
Target Start/End: Complemental strand, 10888 - 10792
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctca 788  Q
    ||||||| ||||||| |||||||||  || | |||||||||||||| ||| |||||||| |||||||||||  |  ||||||||||||||||||||||    
T  10888 gagtagtccagtccccttgcacttcacagggttttcactataatcaatcttgattacaatttgttcaaggaaac-accaagagacttctcaatgctca 10792  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 692 - 808
Target Start/End: Original strand, 128396 - 128513
Alignment:
Q  692 gagtagttcagtccc-ttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaag 790  Q
    ||||||| ||||||| |||||||| |||| |||||||| |||| |||| |||||||||| | | | |||||| || ||||||||||||||  | ||||||    
T  128396 gagtagtccagtccccttgcacttgcaagagatttcacaataaccactatggattacaattagcttaaggacactaccaagagacttctcttttctcaag 128495  T
Q  791 aacaactacaagatactt 808  Q
     |||||| ||||| ||||    
T  128496 cacaactgcaagagactt 128513  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 851 - 918
Target Start/End: Original strand, 128529 - 128596
Alignment:
Q  851 ctacctaaagactttctgctcaaggacaactccaagatacttccattttcttaagcataactgcttaa 918  Q
    ||||||||| |||| ||||||||||| |||||||||| |||| ||||| |||||||  ||||||||||    
T  128529 ctacctaaaaacttcctgctcaaggataactccaagagacttacatttgcttaagcgcaactgcttaa 128596  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 849 - 887
Target Start/End: Original strand, 25972 - 26010
Alignment:
Q  849 cactacctaaagactttctgctcaaggacaactccaaga 887  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  25972 cactacctaaagacttcctgctcaaggacaactccaaga 26010  T

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Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 569
Target Start/End: Original strand, 25772 - 25841
Alignment:
Q  495 aagaagggttgaattgtgttggctttttgacggtttctttttctgagtgtttataaaaacctggtcagaatctga 569  Q
    |||| ||||||||||||||||| |||||| || ||||||||||| ||||||    ||||||||||||||| ||||    
T  25772 aagaggggttgaattgtgttggttttttg-cgatttctttttctaagtgtt----aaaacctggtcagaacctga 25841  T

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Target: scaffold0471 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 522
Target Start/End: Original strand, 2650 - 2699
Alignment:
Q  473 ctgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  2650 ctgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcttttt 2699  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 7858 - 7914
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| | || |||| ||||||||||||||| |||||||    
T  7858 ataccaattgaaggtgagaaaaacataagaagaggggttgaattgtgttagcttttt 7914  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 23824 - 23872
Alignment:
Q  474 tgaaggtgagaaaaatacaataagaagggttgaattgtgttggcttttt 522  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| |||||    
T  23824 tgaaggtgagaaaaacacaagaaggagggttgaattgtgttggtttttt 23872  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 734
Target Start/End: Original strand, 78757 - 78817
Alignment:
Q  675 ttcctcccataacacatgagtagttcagtcc-cttgcacttccaagcgatttcactataat 734  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||| ||||| ||||||||    
T  78757 ttcctcctacaacacatgagtagtccagtcctcttgcacttccaagggattttactataat 78817  T

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Target: scaffold0527 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 795
Target Start/End: Complemental strand, 1234 - 1143
Alignment:
Q  704 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaa 795  Q
    ||||||||| |||||| ||||||||||||||||||   |||| ||| ||| |  ||||| |||||||||||||||   ||||||||| ||||    
T  1234 cccttgcacatccaagggatttcactataatcactactgattgcaaattgctagaggacacttccaagagacttccttatgctcaagcacaa 1143  T

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Target: scaffold0527; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 795
Target Start/End: Complemental strand, 9297 - 9206
Alignment:
Q  704 cccttgcacttccaagcgatttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaa 795  Q
    ||||||||| |||||| ||||||||||||||||||   |||| ||| ||| |  ||||| |||||||||||||||   ||||||||| ||||    
T  9297 cccttgcacatccaagggatttcactataatcactactgattgcaaattgctagaggacacttccaagagacttccttatgctcaagcacaa 9206  T

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Target: scaffold0439 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 7637 - 7574
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaat-acaataagaagggttgaattgtgttggcttttt 522  Q
    ||||| ||||||| |||||||||||||||  |||| |||  |||||||||||||||||||||||    
T  7637 gctctgataccaattgaaggtgagaaaaaacacaagaaggggggttgaattgtgttggcttttt 7574  T

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Target: scaffold0300 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 797
Target Start/End: Original strand, 11516 - 11590
Alignment:
Q  722 atttcactataatcactctggattacaagttgttcaaggactcttccaagagacttctcaatgctcaagaacaact 797  Q
    ||||||||||||||||  |||||||||| ||  ||||||||    |||||||||||||||||||||||| ||||||    
T  11516 atttcactataatcaca-tggattacaattttctcaaggacatacccaagagacttctcaatgctcaagcacaact 11590  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 33787 - 33733
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  33787 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 33733  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 52620 - 52566
Alignment:
Q  460 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaattgtgtt 514  Q
    ||||| ||||||| ||||||||||||||| |||| |||  |||||||||||||||    
T  52620 gctctgataccaattgaaggtgagaaaaacacaagaaggggggttgaattgtgtt 52566  T

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Target: scaffold0290 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 19577 - 19520
Alignment:
Q  466 ataccaactgaaggtgagaaaaatacaataagaaggg-ttgaattgtgttggcttttt 522  Q
    ||||||| ||||||||||||||| |||| |||  ||| ||||||||||||||||||||    
T  19577 ataccaattgaaggtgagaaaaacacaagaagggggggttgaattgtgttggcttttt 19520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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