View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_10 (Length: 442)
Name: NF6459_low_10
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 80 - 418
Target Start/End: Original strand, 8142221 - 8142560
Alignment:
| Q |
80 |
tccgctatttgtcatattggattttt-ggcaatccaatattttccacgatccgatattaatcgataggaattacatatcaagaatagatgaagtacaatc |
178 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8142221 |
tccgctatttgtcatattggattttttggcaatccaatattttccacgatccgatattaatagataggaattacatatcaagaatagatgaagtacaatc |
8142320 |
T |
|
| Q |
179 |
ttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact |
278 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8142321 |
ttcaagccatacatagtcactgtgagttaaggtat---gattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagact |
8142417 |
T |
|
| Q |
279 |
ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgttacttgaatctataggcatatg---tcc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
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| T |
8142418 |
ctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtaacttgaatctataggcatatgtaatac |
8142517 |
T |
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| Q |
376 |
aaattgcatcnnnnnnnggtgaagatacttggcatttggtata |
418 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |
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| T |
8142518 |
aaattgcatctttttttggtgaagatacttgacatttggtata |
8142560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 147 - 424
Target Start/End: Complemental strand, 7501177 - 7500900
Alignment:
| Q |
147 |
aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttattt |
246 |
Q |
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| T |
7501177 |
aattacatgtcaagaatacatgaagtacattcttcaagccatacatagtcattgtgagttaaggcat---gcttggctaagatatgtgcctcatttattt |
7501081 |
T |
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| Q |
247 |
atattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaat |
346 |
Q |
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|||| |||||||||||||||| ||||| ||||||| | ||||||| | ||||||||||||||||||| ||||| ||| ||||| ||||||| ||||| |
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| T |
7501080 |
gtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatggcaaat |
7500981 |
T |
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| Q |
347 |
ctgttacttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtatatggata |
424 |
Q |
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|||| |||||||| ||||||| |||| ||||||||||||| |||||||||||||| | |||| |||| ||||| |
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| T |
7500980 |
ctgtaacttgaatttataggcttatgtcatccaaattgcatctttttttggtgaagatacttgtcgtttgatataaggata |
7500900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 240 - 424
Target Start/End: Complemental strand, 7498299 - 7498112
Alignment:
| Q |
240 |
tttatttatattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctat |
339 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
7498299 |
tttatttatattcattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctat |
7498200 |
T |
|
| Q |
340 |
gacaaatctgttacttgaatctataggcatatg---tccaaattgcatcnnnnnnnggtgaagatacttggcatttggtatatggata |
424 |
Q |
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||||||||||| |||| |||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
7498199 |
gacaaatctgtaactttaatctataggtatatgtaattcaaattgcatctttttttggtcaagatacttggcatttggtataaggata |
7498112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 8142136 - 8142208
Alignment:
| Q |
18 |
ctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctatttg |
90 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8142136 |
ctatttgtgtgttcgcatgctttattttatacataattatttatttgaacagttttgcagtttccgctctttg |
8142208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 4931710 - 4931654
Alignment:
| Q |
33 |
catgctttattttatacataattatttatttgaacagttttgcagtttccgctattt |
89 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||| | ||||| |||| |||||| |
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| T |
4931710 |
catgctttattttatatataattatttatttcaacaggtgtgcagcttccactattt |
4931654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 7498560 - 7498499
Alignment:
| Q |
147 |
aattacatatcaagaatagatgaagtacaatcttcaagccatacatagtcactgtgagttaagg |
210 |
Q |
| |
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|||||||||||||||||| ||| |||| |||||| |||||||||||||||| |||||||||| |
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| T |
7498560 |
aattacatatcaagaataaatgtagtat--tcttcatgccatacatagtcactttgagttaagg |
7498499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 9130957 - 9131066
Alignment:
| Q |
30 |
tagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctatttgtcatattggatttttggcaatccaatattttccacgatc |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| | || |||||| | |||||| | ||||||||| ||| ||||||||| |||| |
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| T |
9130957 |
tagcatgctttattttatatataattatttatttgaaccgttttgtggcttacgctatgtatcatatcgaatttttggcgatctgatattttccgcgata |
9131056 |
T |
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| Q |
130 |
cgatattaat |
139 |
Q |
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|||||||||| |
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| T |
9131057 |
cgatattaat |
9131066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 22209859 - 22209802
Alignment:
| Q |
80 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatatta |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||| |
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|
| T |
22209859 |
tccgctatttgtcatatcggatttttggcgatccaatattttccgtgatcagatatta |
22209802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 1530418 - 1530466
Alignment:
| Q |
81 |
ccgctatttgtcatattggatttttggcaatccaatattttccacgatc |
129 |
Q |
| |
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||||||||||| |||||||||||||||| |||| ||| ||||||||||| |
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| T |
1530418 |
ccgctatttgttatattggatttttggcgatccgatactttccacgatc |
1530466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 1492294 - 1492344
Alignment:
| Q |
80 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatcc |
130 |
Q |
| |
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|||||||||||| |||| ||||||||||| |||| ||||||||| |||||| |
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| T |
1492294 |
tccgctatttgttatatcggatttttggcgatcctatattttccgcgatcc |
1492344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 54256646 - 54256587
Alignment:
| Q |
80 |
tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat |
139 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||||| |
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|
| T |
54256646 |
tccgctatttctcatagcagatttttggcgatccgatattttccacgatccgctattaat |
54256587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 41514478 - 41514446
Alignment:
| Q |
31 |
agcatgctttattttatacataattatttattt |
63 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
41514478 |
agcatgctttattttatatataattatttattt |
41514446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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