View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6459_low_14 (Length: 298)

Name: NF6459_low_14
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6459_low_14
NF6459_low_14
[»] chr1 (2 HSPs)
chr1 (1-60)||(12396113-12396172)
chr1 (241-271)||(13078839-13078869)
[»] chr3 (4 HSPs)
chr3 (234-266)||(45657808-45657840)
chr3 (234-271)||(19150357-19150394)
chr3 (234-267)||(31017432-31017465)
chr3 (241-274)||(32622408-32622441)
[»] chr5 (3 HSPs)
chr5 (238-269)||(33191544-33191575)
chr5 (241-273)||(18004301-18004333)
chr5 (241-277)||(41460106-41460142)
[»] chr4 (8 HSPs)
chr4 (234-269)||(50980600-50980635)
chr4 (241-271)||(33860586-33860616)
chr4 (234-271)||(32696827-32696864)
chr4 (234-267)||(38792927-38792960)
chr4 (234-267)||(39881068-39881101)
chr4 (234-267)||(55996422-55996455)
chr4 (234-266)||(37977122-37977154)
chr4 (241-269)||(41010203-41010231)
[»] chr2 (1 HSPs)
chr2 (237-267)||(32498928-32498958)
[»] scaffold0115 (1 HSPs)
scaffold0115 (234-274)||(15226-15266)
[»] chr6 (1 HSPs)
chr6 (241-269)||(31417341-31417369)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12396113 - 12396172
Alignment:
Q  1 ttcagtttcgaaatcgaaagagtgtaatctaagtcacgagtcgacgtcgttttgatgtta 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12396113 ttcagtttcgaaatcgaaagagtgtaatctaagtcacgagtcgacgtcgttttgatgtta 12396172  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 13078869 - 13078839
Alignment:
Q  241 aaaatgattgtataaatatcatttctctaaa 271  Q
    |||||||||||||||||||||||||||||||    
T  13078869 aaaatgattgtataaatatcatttctctaaa 13078839  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 45657808 - 45657840
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttct 266  Q
    |||||||||||||||||||||||||||||||||    
T  45657808 ttgttagaaaatgattgtataaatatcatttct 45657840  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 19150357 - 19150394
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctctaaa 271  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  19150357 ttgttaaaaaatgattgtacaaatatcatttctctaaa 19150394  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 31017432 - 31017465
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctc 267  Q
    ||||||||||||||||||| ||||||||||||||    
T  31017432 ttgttagaaaatgattgtacaaatatcatttctc 31017465  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 32622408 - 32622441
Alignment:
Q  241 aaaatgattgtataaatatcatttctctaaattt 274  Q
    ||||||||||||||||||||||||||| ||||||    
T  32622408 aaaatgattgtataaatatcatttctcaaaattt 32622441  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 269
Target Start/End: Complemental strand, 33191575 - 33191544
Alignment:
Q  238 tagaaaatgattgtataaatatcatttctcta 269  Q
    ||||||||||||||||||||||||||||||||    
T  33191575 tagaaaatgattgtataaatatcatttctcta 33191544  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 18004301 - 18004333
Alignment:
Q  241 aaaatgattgtataaatatcatttctctaaatt 273  Q
    ||||| |||||||||||||||||||||||||||    
T  18004301 aaaattattgtataaatatcatttctctaaatt 18004333  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 41460142 - 41460106
Alignment:
Q  241 aaaatgattgtataaatatcatttctctaaattttaa 277  Q
    ||||||||||||||||||||||||||| || ||||||    
T  41460142 aaaatgattgtataaatatcatttctcaaacttttaa 41460106  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 50980635 - 50980600
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctcta 269  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50980635 ttgttagaaaatgattgtacaaatatcatttctcta 50980600  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 33860586 - 33860616
Alignment:
Q  241 aaaatgattgtataaatatcatttctctaaa 271  Q
    |||||||||||||||||||||||||||||||    
T  33860586 aaaatgattgtataaatatcatttctctaaa 33860616  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 32696827 - 32696864
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctctaaa 271  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  32696827 ttgttagaaaatggttgtacaaatatcatttctctaaa 32696864  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 38792927 - 38792960
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctc 267  Q
    |||||||||||||| |||||||||||||||||||    
T  38792927 ttgttagaaaatgaatgtataaatatcatttctc 38792960  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 39881068 - 39881101
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctc 267  Q
    ||||||||||||||||||| ||||||||||||||    
T  39881068 ttgttagaaaatgattgtacaaatatcatttctc 39881101  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 55996455 - 55996422
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctc 267  Q
    ||||||||||||||||||| ||||||||||||||    
T  55996455 ttgttagaaaatgattgtacaaatatcatttctc 55996422  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 37977154 - 37977122
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttct 266  Q
    |||||||||||||||||| ||||||||||||||    
T  37977154 ttgttagaaaatgattgtgtaaatatcatttct 37977122  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 41010203 - 41010231
Alignment:
Q  241 aaaatgattgtataaatatcatttctcta 269  Q
    |||||||||||||||||||||||||||||    
T  41010203 aaaatgattgtataaatatcatttctcta 41010231  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 32498958 - 32498928
Alignment:
Q  237 ttagaaaatgattgtataaatatcatttctc 267  Q
    |||||||||||||||||||||||||||||||    
T  32498958 ttagaaaatgattgtataaatatcatttctc 32498928  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 15226 - 15266
Alignment:
Q  234 ttgttagaaaatgattgtataaatatcatttctctaaattt 274  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  15226 ttgttaaaaagtgattgtacaaatatcatttctctaaattt 15266  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 31417341 - 31417369
Alignment:
Q  241 aaaatgattgtataaatatcatttctcta 269  Q
    |||||||||||||||||||||||||||||    
T  31417341 aaaatgattgtataaatatcatttctcta 31417369  T

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