View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_2 (Length: 802)
Name: NF6459_low_2
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 775
Target Start/End: Original strand, 11318284 - 11319034
Alignment:
| Q |
19 |
tgaacttcagaacctgagaaaataacacaaagttcattcatcaaatttatctatttctatctatttgattacatcacctaacagttcaagttagatcaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11318284 |
tgaacttcagaacctgagaaaataacacaaagttcattcatcaaatttatctatttctatctatttgattacatcacctaacagttcaagttagatcaag |
11318383 |
T |
|
| Q |
119 |
acaatgatcacaatattgtgtggacttatctaatttgataatatcagcatttgagtgaggtaaatttgcttcacatgtctttagagaaattaccaagcga |
218 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11318384 |
acaatgatcacaatcttgtgtgaacttatctaatttgataatatcagcatttgagtgaggtaaatttgcttcacatgtctttagagaaattaccaagcga |
11318483 |
T |
|
| Q |
219 |
taatataaatagttgtctgctcaattttgacatagttgagagcaaatggtaagatgtaccttaacatcaaggagttgacaat----nnnnnnnnntcaac |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
11318484 |
taatataaatagttgtctgctcaattttgacatagttgagagcaaatggtaagatgtaccttaacatcaaggtgttgacaataaaaaaaaaaaaatcaac |
11318583 |
T |
|
| Q |
315 |
atttttatctatggacnnnnnnnctgcagccaattgaagctcagcttgattgaaaacaacgaggaaatgtaatgtacaaaattctacaagtttcatgaga |
414 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11318584 |
atttttatctatggacaaaaaaactgcagccaattgaagctcagcttgattgaaaacaacgaggaaatgtattgtacaaaattctacaagtttca----- |
11318678 |
T |
|
| Q |
415 |
ataggagcagaattatacagacagttggatgtgtatgccccatcttcacaggtagaaaaaatctaaatatttcgtgactatcatatgaaaaaacctaaat |
514 |
Q |
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| T |
11318679 |
--acgaggaaa---ctgcagacagttggatgtgtatgccccaccttcacaggtagaaaaaatataaatatttcgtgactatcatataaaaaaacctaaat |
11318773 |
T |
|
| Q |
515 |
gtggcttcattcctaaataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccnnnnnnnnnn |
614 |
Q |
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| T |
11318774 |
gtggcttcattcctaaataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccaaaaagaaaa |
11318873 |
T |
|
| Q |
615 |
nnnnnnnnnnnnttgaacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactat |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11318874 |
attaaaataaaattgaacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactat |
11318973 |
T |
|
| Q |
715 |
taaagcccagacaggtgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
775 |
Q |
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| T |
11318974 |
taaagcccagacaggtgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
11319034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 641 - 759
Target Start/End: Complemental strand, 29402399 - 29402281
Alignment:
| Q |
641 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
740 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
29402399 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
29402300 |
T |
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| Q |
741 |
aaatcaatttccaaggaat |
759 |
Q |
| |
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|||| |||||||||||||| |
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| T |
29402299 |
aaattaatttccaaggaat |
29402281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 641 - 759
Target Start/End: Original strand, 10159443 - 10159561
Alignment:
| Q |
641 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
740 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
10159443 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
10159542 |
T |
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| Q |
741 |
aaatcaatttccaaggaat |
759 |
Q |
| |
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|||| |||||||||||||| |
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| T |
10159543 |
aaattaatttccaaggaat |
10159561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 15145681 - 15145764
Alignment:
| Q |
19 |
tgaacttcagaacctgagaaaataac--acaaagttcattcatcaaatttatctatttctatctatttgattacatcacctaac |
100 |
Q |
| |
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||||||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
15145681 |
tgaacttcagaacctaagaaaataacctataaagttcattcatcaaatttatatatttctatctatttgatcacatcacctaac |
15145764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 22622857 - 22622814
Alignment:
| Q |
47 |
aaagttcattcatcaaatttatctatttctatctatttgattac |
90 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
22622857 |
aaagttcattcatcaaatttatatgtttctatctatttgattac |
22622814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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