View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_22 (Length: 251)
Name: NF6459_low_22
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 11395103 - 11395345
Alignment:
| Q |
10 |
attatactagtgtaaaataattgttgtacaatgacaatgtatagtaactaaactcatcatatagttaaaacagtttttnnnnnnnctgtcaaattgaacg |
109 |
Q |
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| T |
11395103 |
attatactcgtgtaaaataattgttgtacaatgacaaagtatagtaactaaactcatcatatagttaaaacagtttttaaaaaaactgtcaaattgaacg |
11395202 |
T |
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| Q |
110 |
taagtgtaaaactactttacactgg-cattgcattgcaggacctttttctgtcaaagaaatggtggatccgagatccgacccatatatatccggtttaaa |
208 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11395203 |
taagtgtaaaactactttacaccggacattgcattgcaggacctttttctgtcaaagaaatggtggatccgagatccgacccatatatatccggtttaaa |
11395302 |
T |
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| Q |
209 |
acctttaaacccataacaaacaccctccgtttaaatccccgtt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11395303 |
acctttaaacccataacaaacaccctccgtttaaatccccgtt |
11395345 |
T |
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