View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_26 (Length: 244)
Name: NF6459_low_26
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 5437356 - 5437145
Alignment:
| Q |
18 |
atttccgcatatctaaccctgccactaggaaagtttcaataatattaggatctttaagccaaaattttaaaaatgaatcttcaacgtatagttcactttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| |
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| T |
5437356 |
atttccgcatatctaaccctgccactaggaaagtttcaataatattaggatctttta--------------aatgaatcttcagcatatagttcactttt |
5437271 |
T |
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| Q |
118 |
ggttatgatgattcaacagacactcataaagtggtggcctttcgctcaggggggtttggaagtgaaagttttcaatttgggtgataacatttggagagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5437270 |
ggttatgatgattcaacagacactcataaagtggtggcctttcgcccaggggg-tttggaagtgaaagttttcaatttgggtgataacattcggagagat |
5437172 |
T |
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| Q |
218 |
attcaaagtttacccgtcattccttat |
244 |
Q |
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| T |
5437171 |
attcaaagtttacccgtcattccttat |
5437145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 18921140 - 18921091
Alignment:
| Q |
179 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagttt |
228 |
Q |
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| T |
18921140 |
gtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttt |
18921091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 53774527 - 53774571
Alignment:
| Q |
182 |
aaagttttcaatttgggtgataacatttggagagatattcaaagt |
226 |
Q |
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| T |
53774527 |
aaagttttcactttgggtgatagtatttggagagatattcaaagt |
53774571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 17561145 - 17561110
Alignment:
| Q |
193 |
tttgggtgataacatttggagagatattcaaagttt |
228 |
Q |
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| T |
17561145 |
tttgggtgataacgtttggagagatattcaaagttt |
17561110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 22520639 - 22520601
Alignment:
| Q |
181 |
gaaagttttcaatttgggtgataacatttggagagatat |
219 |
Q |
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| T |
22520639 |
gaaagttttcagtttgggtgataacatttggagaaatat |
22520601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 24391074 - 24391123
Alignment:
| Q |
179 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagttt |
228 |
Q |
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|||| |||||| | |||||||||||| ||||||||| ||||||||||||| |
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| T |
24391074 |
gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttt |
24391123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 19351449 - 19351397
Alignment:
| Q |
179 |
gtgaaagttttcaatttgggtgataacatttggagagatattcaaagtttacc |
231 |
Q |
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||||||||||| | |||| ||||||| ||||||||||||||| ||||||||| |
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| T |
19351449 |
gtgaaagtttttagtttgagtgataatgtttggagagatattccaagtttacc |
19351397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 6935685 - 6935653
Alignment:
| Q |
109 |
ttcacttttggttatgatgattcaacagacact |
141 |
Q |
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| T |
6935685 |
ttcacttttggttatgataattcaacagacact |
6935653 |
T |
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