View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6459_low_3 (Length: 668)
Name: NF6459_low_3
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 624; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Complemental strand, 397963 - 397328
Alignment:
| Q |
19 |
cctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagcttttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
397963 |
cctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagcttttta |
397864 |
T |
|
| Q |
119 |
tgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397863 |
tgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatat |
397764 |
T |
|
| Q |
219 |
actcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggcca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397763 |
actcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggcca |
397664 |
T |
|
| Q |
319 |
actcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaagga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397663 |
actcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaagga |
397564 |
T |
|
| Q |
419 |
cactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcgccttgttcgacaaaaagagaagccat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
397563 |
cactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcaccttgttcgacaaaaagagaagccat |
397464 |
T |
|
| Q |
519 |
ttgtgtgaatacaacagagtaaataatagtgcacagccaaactggtatcattctcaacacacatttggcttcctcaacttgagttacagtgcaaagccgc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
397463 |
ttgtgtgaatacaacagagtaaataatagtgcacagccaaactggtatcattctcaacacacatttggcttcctcaacttgagttacagtgcaaagtcgc |
397364 |
T |
|
| Q |
619 |
cattggttcccggattcattcccgtcttttactgtc |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
397363 |
cattggttcccggattcattcccgtcttttactgtc |
397328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 35 - 647
Target Start/End: Original strand, 3802837 - 3803449
Alignment:
| Q |
35 |
tcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttg |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
3802837 |
tcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttg |
3802936 |
T |
|
| Q |
135 |
accattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactcaaattactttgt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
3802937 |
accattgaagaactccaactgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaatttgatagaatatactcaaagaactagcc |
3803036 |
T |
|
| Q |
235 |
ttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggccaactcccattctttgaa |
334 |
Q |
| |
|
|||| | | |||| ||| |||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
3803037 |
ttctcttccggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaa |
3803136 |
T |
|
| Q |
335 |
gttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaaggacactgcatatatcaaa |
434 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||| |
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|
| T |
3803137 |
gttcacttaaccccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaa |
3803236 |
T |
|
| Q |
435 |
cacagacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcgccttgttcgacaaaaagagaagccatttgtgtgaatacaaca |
534 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3803237 |
cacagacatggttgcagctggtaagtgaaactttcgtaccttgttgttcattgcatcgccttgttcgacaaaaagagaagccatttgtgtaaatacaaca |
3803336 |
T |
|
| Q |
535 |
gagtaaataatagtgcacagccaaactggtatcattctcaacacacatttggcttcctcaacttgagttacagtgcaaagccgccattggttcccggatt |
634 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3803337 |
gagtaaataatagtgcatagccaaaccggtatcattctcaacacacatttggcttcctctacttgagttacagtacaaagccgccattggttcccggatt |
3803436 |
T |
|
| Q |
635 |
cattcccgtcttt |
647 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3803437 |
cattcccgtcttt |
3803449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 2745903 - 2745785
Alignment:
| Q |
61 |
ctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgaccca |
160 |
Q |
| |
|
|||||||| ||||| | || ||||| | ||||||||||| ||||||||||||||| | ||||||||||| || |||||| |||||||| ||||| | |
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|
| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaactccaattgaccaa |
2745804 |
T |
|
| Q |
161 |
catacataaaaacttctga |
179 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
2745803 |
catacatgaaaacttctga |
2745785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 52809497 - 52809666
Alignment:
| Q |
54 |
catgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
153 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| |
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|
| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
52809596 |
T |
|
| Q |
154 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactca |
223 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
52809597 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
52809666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 404 - 615
Target Start/End: Original strand, 52809847 - 52810058
Alignment:
| Q |
404 |
cagtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgttcattacatcgccttgttcgac |
503 |
Q |
| |
|
|||||||||| || ||||| || || ||||||||||||||| | ||||||||||| ||||||| ||| | || |||||| ||||| ||||| || || |
|
|
| T |
52809847 |
cagtgcatactagcacactacagatgtcaaacacagacatgctggctgctggcaaatgaaattctccgatgttagagttcatcacatccccttgctcaac |
52809946 |
T |
|
| Q |
504 |
aaaaagagaagccatttgtgtgaatacaacagagtaaataatagtgcacagccaaactggtatcattctcaacacacatttggcttcctcaacttgagtt |
603 |
Q |
| |
|
||| || || ||||||||||| ||||||||||||||| ||| ||||| ||||||| ||| | |||||| ||||| ||||| | ||||||||||||||| |
|
|
| T |
52809947 |
aaatagtgatgccatttgtgtaaatacaacagagtaacaaatggtgcatagccaaattggaagcattcttaacacgcattttgtttcctcaacttgagtc |
52810046 |
T |
|
| Q |
604 |
acagtgcaaagc |
615 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
52810047 |
actgtgcaaagc |
52810058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 4708319 - 4708470
Alignment:
| Q |
64 |
acataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacat |
163 |
Q |
| |
|
||||| || ||||| ||||| |||| ||| ||||||| |||||| || || |||| ||||||||||| |||| ||||||||||||| ||||| || |||| |
|
|
| T |
4708319 |
acatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgccctacat |
4708418 |
T |
|
| Q |
164 |
acataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaa |
215 |
Q |
| |
|
||||||| || || ||||| || | ||| ||||||| || ||||| ||||| |
|
|
| T |
4708419 |
acataaacacctcagaagctcctataagtgcatactgagggatttgccagaa |
4708470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 559
Target Start/End: Original strand, 4708758 - 4708829
Alignment:
| Q |
488 |
catcgccttgttcgacaaaaagagaagccatttgtgtgaatacaacagagtaaataatagtgcacagccaaa |
559 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||| || |||||||| || || ||||| ||||||| |
|
|
| T |
4708758 |
catcaccttgctccacaaaaagagaagccatttgtgtgaaaaccacagagtatattatggtgcagagccaaa |
4708829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 40744239 - 40744112
Alignment:
| Q |
94 |
caaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaa |
193 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||| |||| ||||||| || || || || || |||||||||||||| || ||||| || | ||| |
|
|
| T |
40744239 |
caaagtgcacttccaaagctctttaatccatcaggtgtttgagcattgaaaaattctaattgtcctacatacataaaaacctcagaagctcctataagtg |
40744140 |
T |
|
| Q |
194 |
catactgtggaatttgacagaatatact |
221 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |
|
|
| T |
40744139 |
catactgaggaatttgccagaagatact |
40744112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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