View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6459_low_31 (Length: 239)
Name: NF6459_low_31
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_31 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 42578947 - 42579099
Alignment:
| Q |
4 |
gatggacatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggat |
103 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
42578947 |
gatgcacatcatcatccaatttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccaacttacgctatcgaagactttggat |
42579046 |
T |
|
| Q |
104 |
atatcaagtttcaaggcaatctcacctttgttccccttagttttgcagcgcatg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42579047 |
atatcaagtttcaaggcaatctcacctttgtt-cccttagttttgcagcgcatg |
42579099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 43606339 - 43606260
Alignment:
| Q |
160 |
aaacacctcaacttaattattgaatgaattgacttaatgcatattggaattaaaaaataaattatggagtcgttgtaatt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606339 |
aaacacctcaacttaattattgaatgaattgacttaatgcatattggaattaaaaaataaattatggagtcgttgtaatt |
43606260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 1863 - 1986
Alignment:
| Q |
9 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
108 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||| ||| |||||| |||| | ||||||||||| || || || || |||||||||||||| |
|
|
| T |
1863 |
acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc |
1962 |
T |
|
| Q |
109 |
aagtttcaaggcaatctcaccttt |
132 |
Q |
| |
|
||||||||| |||| ||||||||| |
|
|
| T |
1963 |
aagtttcaaagcaacctcaccttt |
1986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 12460971 - 12461094
Alignment:
| Q |
9 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
108 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||| ||| |||||| |||| | ||||||||||| || || || || |||||||||||||| |
|
|
| T |
12460971 |
acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc |
12461070 |
T |
|
| Q |
109 |
aagtttcaaggcaatctcaccttt |
132 |
Q |
| |
|
||||||||| |||| ||||||||| |
|
|
| T |
12461071 |
aagtttcaaagcaacctcaccttt |
12461094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 13190525 - 13190615
Alignment:
| Q |
26 |
acccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatcaagtttca |
116 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||| | ||| |||||||||| |||||| || ||||| |||||||||||||||| |
|
|
| T |
13190525 |
acccattgtgaacaaaatcccatcttagtaagaatagcttcgaggtatgaccagcttatgctatcaaaagcttttgatatatcaagtttca |
13190615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 16861133 - 16861010
Alignment:
| Q |
9 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
108 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||| |||| ||| |||||| ||||| | ||||||||||| || || || || ||||||||||| || |
|
|
| T |
16861133 |
acatcatcatccaagttatccattgagaacaaaaacccaacttttcaagaatagcttgaagataagaccagctgacactgtcaaatgctttggatatgtc |
16861034 |
T |
|
| Q |
109 |
aagtttcaaggcaatctcaccttt |
132 |
Q |
| |
|
||||||||| |||| ||||||||| |
|
|
| T |
16861033 |
aagtttcaaagcaacctcaccttt |
16861010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University