View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_39 (Length: 231)
Name: NF6459_low_39
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 34467074 - 34467274
Alignment:
| Q |
14 |
cataggaagcatcccagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaatgaagaccgttctcacgtctggaaatata |
113 |
Q |
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| T |
34467074 |
cataggaagcatcccagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaacgaagaccgttctcacgtctggaaatata |
34467173 |
T |
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| Q |
114 |
cttgatgagaataccttcgcagcaccaaaaaaggttaatatatatatttcctttgttataaatttgttacataaatagaaagactggtgcatggatctaa |
213 |
Q |
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| T |
34467174 |
cttgatgagaataccttcgcagcaccaaaaaaggttaatatatatatttcctttgttataaatttgttacataaatagaaagactggtgcatggatctaa |
34467273 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
34467274 |
t |
34467274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 34441358 - 34441539
Alignment:
| Q |
29 |
agtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaatgaagaccgttctcacgtctggaaatatacttgatgagaatacc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | |
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| T |
34441358 |
agtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagc |
34441457 |
T |
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| Q |
129 |
ttcgcagcaccaaaaaaggttaatatatatatttcctttgttataaatttgttacataaatagaaagactggtgcatggatctaat |
214 |
Q |
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| T |
34441458 |
ttcacagaaccaaaaaaggtt----catatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaat |
34441539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 34451175 - 34451345
Alignment:
| Q |
37 |
tcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaatgaagaccgttctcacgtctggaaatatacttgatgagaataccttcgcagc |
136 |
Q |
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||||||||||| |||| |||| || ||||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||||||| |||||||| |
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| T |
34451175 |
tcaagatttctattcagggatttgcgagcaaaaacctaaaagggtcaacaaagactgttctcac---tggaaatgaacttgatgagaatagcttcgcaga |
34451271 |
T |
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| Q |
137 |
accaaaaaaggttaatatatatatttcctttgttataaatttgttacataaatagaaagactggtgcatggatctaat |
214 |
Q |
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||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||| | ||||||||||||| |
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| T |
34451272 |
accaaaaaaggtt----catatatttcctctgttatatatttgttacaaaaataaaaagactagcgcatggatctaat |
34451345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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