View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_5 (Length: 533)
Name: NF6459_low_5
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 43850476 - 43850863
Alignment:
| Q |
21 |
cacactcgcgggtatggtttggtttgagtggttaatggttattatgatgatgaaatcctaagttactaattggcccttaggcttagtacttgtcttgagg |
120 |
Q |
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| T |
43850476 |
cacactcgcgggtatggtttggtttgagtggttaatggttattatgatgatgaaatcctaagttactaattggcccataggcttagtacttgtcttgagg |
43850575 |
T |
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| Q |
121 |
gtattcacggtaattttcaggatactagaacttctctacttgtttgcgatgtagtatgatgatacttggattaccttagctttctatggaaactaaaaca |
220 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43850576 |
gtattcgcggtaattttcaggatactggaacttctctacttgtttgcgatgtagtatgatgatacttggattaccttagctttctatggaaactaaaaca |
43850675 |
T |
|
| Q |
221 |
tgtacgtgtcatgtacagcaacatacgataagatactttttgcccgagccaggatcctctccattgagannnnnnnnnnncttctttctgctgccctact |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | || ||||||| |
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| T |
43850676 |
tgtacgtgtcatgtacagcaacatacgataagatactttttgcccgagccaggatcctctccattgagattt---------ttttttttcctaccctact |
43850766 |
T |
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| Q |
321 |
tttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctactttcattttccccttgcatggctccatctgagatggcac |
417 |
Q |
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| T |
43850767 |
tttgaaaataattgtccaatctgccctgcattcaaaattattatacaatttaccctactttcattttccccttacatggctccatctgagatggcac |
43850863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 43851883 - 43851777
Alignment:
| Q |
312 |
tgccctacttttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctac-tttcattttccccttgcatggctccatctgag |
410 |
Q |
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| T |
43851883 |
tgcccaacttttgaaaataattgtcctatctaccctacattcaaaattattatccaatctatcctacttttcattttccccttacatggctccatttgag |
43851784 |
T |
|
| Q |
411 |
atggcac |
417 |
Q |
| |
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||||||| |
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| T |
43851783 |
atggcac |
43851777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 526
Target Start/End: Original strand, 43850950 - 43850990
Alignment:
| Q |
486 |
gacttaataatttatacttctttcatcatggcttcatctca |
526 |
Q |
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| T |
43850950 |
gacttaataatttatacttccttcatcatggctccatctca |
43850990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 30327992 - 30328097
Alignment:
| Q |
313 |
gccctacttttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctac-tttcattttccccttgcatggctccatctgaga |
411 |
Q |
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||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| || |||| |||||||| | ||| ||||||||||||||| | |
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| T |
30327992 |
gccctacttttgaaaattattgttcaatttgccctacattgaaaattattgttcaatctatcctacttttcatttccttcttacatggctccatctgata |
30328091 |
T |
|
| Q |
412 |
tggcac |
417 |
Q |
| |
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|||||| |
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|
| T |
30328092 |
tggcac |
30328097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 417
Target Start/End: Complemental strand, 30328495 - 30328390
Alignment:
| Q |
313 |
gccctacttttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctacttt-cattttccccttgcatggctccatctgaga |
411 |
Q |
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||||||||||||||||| ||| ||||||||| ||||||| ||||||||| | |||| ||| |||||| ||||||| |||| ||||||||||||||||| |
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| T |
30328495 |
gccctacttttgaaaattattatccaatttgagctacattgaaaattattctccaatctactgtacttttcattttctccttacatggctccatctgaga |
30328396 |
T |
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| Q |
412 |
tggcac |
417 |
Q |
| |
|
|||||| |
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| T |
30328395 |
tggcac |
30328390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 10135894 - 10135985
Alignment:
| Q |
327 |
aataattgtccaatttgccctacattcaaaattattattcaatttacgctactttca-ttttccccttgcatggctccatctgagatggcac |
417 |
Q |
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||||||||| || | | ||||||||||||||| | ||| |||||||| ||||||| | ||||| |||| |||||| |||||||||||||||| |
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| T |
10135894 |
aataattgtgcactctaccctacattcaaaataaatatccaatttactctacttttatttttctccttacatggcgccatctgagatggcac |
10135985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 32512982 - 32513087
Alignment:
| Q |
313 |
gccctacttttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctactttca-ttttccccttgcatggctccatctgaga |
411 |
Q |
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|
|||||||||| |||| ||||||||||| | ||||||||| ||||| | ||| ||| ||| ||||||| | |||| ||||| ||| ||||||||||||| |
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| T |
32512982 |
gccctactttccaaaaaaattgtccaatgtaccctacattgaaaataaatatccaacataccctacttttacttttgcccttacatagctccatctgaga |
32513081 |
T |
|
| Q |
412 |
tggcac |
417 |
Q |
| |
|
|||||| |
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|
| T |
32513082 |
tggcac |
32513087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 29355856 - 29355780
Alignment:
| Q |
314 |
ccctacttttgaaaataattgtccaatttgccctacattcaaaattattattcaatttacgctactttcattttccc |
390 |
Q |
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||||||||||||||||||| |||||| | |||||| |||||||| | ||| |||| ||| ||||||| |||||||| |
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| T |
29355856 |
ccctacttttgaaaataatactccaatctaccctactttcaaaataaatatccaatctaccctacttttattttccc |
29355780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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