View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_6 (Length: 499)
Name: NF6459_low_6
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 5024617 - 5025089
Alignment:
| Q |
19 |
gatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactaccctgag |
118 |
Q |
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| T |
5024617 |
gatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactaccctgag |
5024716 |
T |
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| Q |
119 |
ttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactattactcgtatt |
218 |
Q |
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| T |
5024717 |
ttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactattactcgtatt |
5024816 |
T |
|
| Q |
219 |
gtcatacggagaatttgaagcctgatcacttgcagtatctaatgattctttgtatctgtgcattgcttcaagaatctgtttaagggctctaagatccttt |
318 |
Q |
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| T |
5024817 |
gtcatacggagaatttgaagtctgatcacttgcagtatctaatgattctttgtatctgtgcattgcttcaagaatctgtttaagggctctaagatccttt |
5024916 |
T |
|
| Q |
319 |
ccggattttttgaactctagatccgccatccttttttcaatttcaccatagaccgagagggaccgatttgaggcctttgttgaaggttcgttattcttgg |
418 |
Q |
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| T |
5024917 |
ccggattttttgaactctagatccgccatccttttttcaatttcaccatagaccgagagggaccgatttgaggcctttgttgaaggttcgttattcttgg |
5025016 |
T |
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| Q |
419 |
aaaattgtgaatatggtgtctcatttgtgattgaaccatccctcctagattgaagcatgtttgtccctttgct |
491 |
Q |
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| T |
5025017 |
aaaattgtgaatatggtgtctcatttgtgattgaaccatccctcctagattgaagcatgtttgtccctttgct |
5025089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 368
Target Start/End: Original strand, 4559307 - 4559403
Alignment:
| Q |
272 |
atctgtgcattgcttcaagaatctgtttaagggctctaagatcctttccggattttttgaactctagatccgccatccttttttcaatttcaccata |
368 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||| ||| |||||| |||||||| ||||| |
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| T |
4559307 |
atctctgcattgcttcaagaatctgtttaagtgctctaagatcctttccggactttttgaactcgagttcccccaaccttttctcaatttcgccata |
4559403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 4559077 - 4559172
Alignment:
| Q |
18 |
agatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactacc |
113 |
Q |
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| T |
4559077 |
agatttatcaggaattggcagttctgtagaaggaggattattggcttttctagtcacttttgttggtttcgtgatgacaattggtaatttactacc |
4559172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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