View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6459_low_8 (Length: 457)

Name: NF6459_low_8
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6459_low_8
NF6459_low_8
[»] chr6 (8 HSPs)
chr6 (14-442)||(9996851-9997270)
chr6 (98-424)||(10002785-10003117)
chr6 (165-268)||(9990234-9990337)
chr6 (169-278)||(10011790-10011899)
chr6 (16-79)||(10002653-10002716)
chr6 (302-353)||(30876603-30876654)
chr6 (319-385)||(9990385-9990451)
chr6 (305-353)||(4248244-4248292)
[»] chr7 (9 HSPs)
chr7 (322-415)||(15268539-15268632)
chr7 (306-416)||(22607511-22607621)
chr7 (322-382)||(14821566-14821626)
chr7 (309-353)||(38622833-38622877)
chr7 (339-384)||(23165533-23165578)
chr7 (308-353)||(34925273-34925318)
chr7 (297-338)||(38621512-38621553)
chr7 (302-330)||(3296141-3296169)
chr7 (172-260)||(33356442-33356530)
[»] chr5 (7 HSPs)
chr5 (322-415)||(17501036-17501129)
chr5 (302-349)||(37443100-37443147)
chr5 (358-418)||(41894417-41894477)
chr5 (320-383)||(385118-385181)
chr5 (327-385)||(27731563-27731621)
chr5 (379-425)||(32704399-32704445)
chr5 (345-423)||(33342723-33342801)
[»] chr8 (5 HSPs)
chr8 (308-384)||(26466061-26466137)
chr8 (309-361)||(29749287-29749339)
chr8 (306-353)||(10372611-10372658)
chr8 (317-351)||(6035076-6035110)
chr8 (311-372)||(6895765-6895826)
[»] chr3 (5 HSPs)
chr3 (320-425)||(21754231-21754336)
chr3 (193-268)||(35991131-35991206)
chr3 (319-385)||(23790383-23790449)
chr3 (308-418)||(51616343-51616453)
chr3 (323-420)||(2990948-2991045)
[»] chr1 (6 HSPs)
chr1 (319-424)||(46937564-46937669)
chr1 (14-77)||(4801728-4801791)
chr1 (363-418)||(15956878-15956933)
chr1 (319-425)||(44853529-44853638)
chr1 (372-418)||(7347693-7347739)
chr1 (318-416)||(32868272-32868370)
[»] chr2 (2 HSPs)
chr2 (319-354)||(34786629-34786664)
chr2 (196-268)||(11246832-11246904)
[»] scaffold0350 (1 HSPs)
scaffold0350 (317-351)||(4473-4507)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Original strand, 9996851 - 9997270
Alignment:
Q  14 aggacacattcaagaatcaaattaactaacaaaatataaatttgaggatcaaactgactaatgacatgttgatcgaatgaaagttaattacccaaagaaa 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9996851 aggacacattcgagaatcaaattaactaacaaaatataaatttgaggatcaaactgactaatgacatgttgatcgaatgaaagttaattacacaaagaaa 9996950  T
Q  114 atgcttttttcactataactctttgtattgatgatagattttctatatcctaacttgcagggaccctcaactagtgaagaagattggtgaagcaactgct 213  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9996951 aagcttttttcactataactctttgtattgatgatagattttctatatcctaacttgcagggaccctcaactagtgaagaagattggtgaagcaactgct 9997050  T
Q  214 cttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaattaagataattgaaatacctaacctatttatcaatcacagaaaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  9997051 cttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaattaagataatcgaaatacctaacctatttgtcaatcacagaaaat 9997150  T
Q  314 aacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttc 413  Q
    ||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997151 aacaatttgttcaaatttcgctacgctacaat---------atactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttc 9997241  T
Q  414 aaatttcgctactatggaccacaatgttg 442  Q
    |||||||||||||||||||||||||||||    
T  9997242 aaatttcgctactatggaccacaatgttg 9997270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 98 - 424
Target Start/End: Original strand, 10002785 - 10003117
Alignment:
Q  98 taattacccaaagaaaatgc---ttttttcactataactctttgtattgatgatagattttctatatcctaacttgcagggaccctcaactagtgaagaa 194  Q
    ||||||| ||||||||||||   |||||||||||| ||||||||||||||||||  ||||| ||||||| || |||||||||||||||||| ||||||||    
T  10002785 taattacacaaagaaaatgccttttttttcactatgactctttgtattgatgatgtattttttatatcccaaattgcagggaccctcaactggtgaagaa 10002884  T
Q  195 gattggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaattaagataattgaa---atacctaac 291  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||  ||   |||||| |     
T  10002885 gattggtgaagcaaccgctcttgaatccagagcaactggaattccatatgtctttgcacctagcatcgcggtaatttagataatcaaaattataccttag 10002984  T
Q  292 ctatttatcaatcacagaaaataacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtg 391  Q
    || ||| || |||  |||||||||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||  ||||||||||||||||||     
T  10002985 ctctttgtcgatcgtagaaaataacaatttgttcaaatttcgctacgctacaatgctatagcgctagtattggacaacaaattgtattaaatagtgtgtt 10003084  T
Q  392 gcacaacaatagcaatttgttcaaatttcgcta 424  Q
    ||||||||||||| |||||||||||||| ||||    
T  10003085 gcacaacaatagcgatttgttcaaattttgcta 10003117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 9990234 - 9990337
Alignment:
Q  165 aacttgcagggaccctcaactagtgaagaagattggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcg 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  9990234 aacttgcagggaccctcaactagtgaagaagattggtgatgcaactgctcttgaagctagagcaactggaattccatatgtcttcgcgccttgcattgcg 9990333  T
Q  265 gtaa 268  Q
    ||||    
T  9990334 gtaa 9990337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 10011790 - 10011899
Alignment:
Q  169 tgcagggaccctcaactagtgaagaagattggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaa 268  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||||    
T  10011790 tgcagggaccctcaactagtgaggagaattggtgaagcaactgctcttgaagctagagcaacgggaattccatatgtcttcgcgccttgcatcgcggtaa 10011889  T
Q  269 ttaagataat 278  Q
    ||||||||||    
T  10011890 ttaagataat 10011899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 10002653 - 10002716
Alignment:
Q  16 gacacattcaagaatcaaattaactaacaaaatataaatttgaggatcaaactgactaatgaca 79  Q
    ||||||||| ||||||||| |||||||| ||| | ||||||||||||||||  |||||||||||    
T  10002653 gacacattcgagaatcaaactaactaacgaaagacaaatttgaggatcaaatagactaatgaca 10002716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 30876603 - 30876654
Alignment:
Q  302 atcacagaaaataacaatttgttcaaatttcgctatgctacaatgctatagc 353  Q
    ||||||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  30876603 atcacagaaaatagcgatttattcaaattacgctatgctacaatgctatagc 30876654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 9990385 - 9990451
Alignment:
Q  319 tttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatag 385  Q
    |||||||||||| ||| ||||||| ||||||||| | | |||| | |||||||||||||||| ||||    
T  9990385 tttgttcaaattccgcaatgctactatgctatagtgttgctatttaacaacactttgtattagatag 9990451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 4248244 - 4248292
Alignment:
Q  305 acagaaaataacaatttgttcaaatttcgctatgctacaatgctatagc 353  Q
    ||||||||||||| ||||||||||||| || | |||||| |||||||||    
T  4248244 acagaaaataacagtttgttcaaattttgcgacgctacagtgctatagc 4248292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 15268632 - 15268539
Alignment:
Q  322 gttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaa 415  Q
    |||||||||  ||||||||||||||||||||||  ||||| ||||| ||||||||| |||| || || | ||| ||||||||  ||||||||||    
T  15268632 gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaacagcgtattgcagaacaatagttatttgttcaa 15268539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 416
Target Start/End: Complemental strand, 22607621 - 22607511
Alignment:
Q  306 cagaaaataacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagca 405  Q
    ||||||||| |  ||| ||||||||  ||||| ||||| ||||||| ||||  ||| | |||||||||||||  || |||||||| ||| ||||||| ||    
T  22607621 cagaaaatagcggtttcttcaaattctgctatactacagtgctataacgctgttatttaacaacactttgtacaaactagtgtgttgcagaacaataaca 22607522  T
Q  406 atttgttcaaa 416  Q
    |||||||||||    
T  22607521 atttgttcaaa 22607511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 14821626 - 14821566
Alignment:
Q  322 gttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaa 382  Q
    |||||||||  ||||||||||||||||||||||  ||||| ||||| ||||||||| ||||    
T  14821626 gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaa 14821566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 38622833 - 38622877
Alignment:
Q  309 aaaataacaatttgttcaaatttcgctatgctacaatgctatagc 353  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  38622833 aaaataacagtttgttcaaatttcgctatacaacaatgctatagc 38622877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 23165533 - 23165578
Alignment:
Q  339 ctacaatgctatagcgctactatgtgacaacactttgtattaaata 384  Q
    ||||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  23165533 ctacaatgctacagcgccactatttgacaacactttgtactaaata 23165578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 34925273 - 34925318
Alignment:
Q  308 gaaaataacaatttgttcaaatttcgctatgctacaatgctatagc 353  Q
    ||||||| || ||||||||||||  |||||||||||||||||||||    
T  34925273 gaaaatagcagtttgttcaaattctgctatgctacaatgctatagc 34925318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 38621512 - 38621553
Alignment:
Q  297 tatcaatcacagaaaataacaatttgttcaaatttcgctatg 338  Q
    |||||||| |||||||||||  ||||||||||||||||||||    
T  38621512 tatcaatcgcagaaaataacggtttgttcaaatttcgctatg 38621553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 3296169 - 3296141
Alignment:
Q  302 atcacagaaaataacaatttgttcaaatt 330  Q
    |||||||||||||||||||||||||||||    
T  3296169 atcacagaaaataacaatttgttcaaatt 3296141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 33356530 - 33356442
Alignment:
Q  172 agggaccctcaactagtgaagaagattggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcat 260  Q
    ||||||||| ||||||||||||  ||||| | ||||||||| ||||||   |||||||| ||||| | |||||| | ||| ||||||||    
T  33356530 agggaccctgaactagtgaagagaattggagcagcaactgcgcttgaagttagagcaacaggaatgcaatatgtttatgcaccttgcat 33356442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 17501036 - 17501129
Alignment:
Q  322 gttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaa 415  Q
    |||||||||  ||||||||||||||||||||||  ||||| ||||| ||||||||| |||| || || | ||| ||||||||  ||||||||||    
T  17501036 gttcaaattctgctatgctacaatgctatagcgtcactatttgacagcactttgtactaaacagcgtattgcagaacaatagttatttgttcaa 17501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 37443100 - 37443147
Alignment:
Q  302 atcacagaaaataacaatttgttcaaatttcgctatgctacaatgcta 349  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  37443100 atcacagaaaataacactttgttcaaattttgctaagctacaatgcta 37443147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 41894477 - 41894417
Alignment:
Q  358 ctatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt 418  Q
    |||| ||||||||||||||| ||||||| || | ||| ||||||| |||||||||||||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaatt 41894417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 385181 - 385118
Alignment:
Q  320 ttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaat 383  Q
    ||||||||| ||| |||||| |||||||||||| ||| |||| |||||||| ||||||| ||||    
T  385181 ttgttcaaacttccctatgcaacaatgctatagtgctgctatttgacaacattttgtatgaaat 385118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 27731563 - 27731621
Alignment:
Q  327 aatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatag 385  Q
    ||||||||||||||||| | ||| |||||| |||| |||||| |||||||| |||||||    
T  27731563 aatttcgctatgctacagtactacagcgctgctatttgacaaaactttgtactaaatag 27731621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 32704445 - 32704399
Alignment:
Q  379 taaatagtgtgtggcacaacaatagcaatttgttcaaatttcgctac 425  Q
    |||||||||||| ||| ||||||||| ||| ||||||||||||||||    
T  32704445 taaatagtgtgtcgcagaacaatagcgattagttcaaatttcgctac 32704399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 33342801 - 33342723
Alignment:
Q  345 tgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatttcgct 423  Q
    |||||||||||  |||| |||||| |||||||| | |||||||| | ||| ||||||||| |||| |||||||| ||||    
T  33342801 tgctatagcgccgctatttgacaatactttgtacttaatagtgtatcgcataacaatagcgatttattcaaattccgct 33342723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 26466137 - 26466061
Alignment:
Q  308 gaaaataacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaata 384  Q
    |||||||||  |||||||||||| | ||||||||||||| ||||||||   ||| ||||||||||| ||||||||||    
T  26466137 gaaaataacggtttgttcaaattccactatgctacaatgatatagcgcaggtatttgacaacacttagtattaaata 26466061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 29749339 - 29749287
Alignment:
Q  309 aaaataacaatttgttcaaatttcgctatgctacaatgctatagcgctactat 361  Q
    ||||||| | ||||||||||||| ||||||||||| |||||||||||| ||||    
T  29749339 aaaataatattttgttcaaattttgctatgctacagtgctatagcgctgctat 29749287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 10372658 - 10372611
Alignment:
Q  306 cagaaaataacaatttgttcaaatttcgctatgctacaatgctatagc 353  Q
    |||||||||||| ||||||||||||| ||||||||| | |||||||||    
T  10372658 cagaaaataacagtttgttcaaatttggctatgctatattgctatagc 10372611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 6035110 - 6035076
Alignment:
Q  317 aatttgttcaaatttcgctatgctacaatgctata 351  Q
    ||||||||||||||| |||||||||||||||||||    
T  6035110 aatttgttcaaattttgctatgctacaatgctata 6035076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 6895826 - 6895765
Alignment:
Q  311 aataacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacact 372  Q
    |||| |||||| |||||||  ||||||||||||||| | |||||| ||||| ||||||||||    
T  6895826 aataccaatttattcaaatcccgctatgctacaatgttttagcgccactatttgacaacact 6895765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 425
Target Start/End: Complemental strand, 21754336 - 21754231
Alignment:
Q  320 ttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaattt 419  Q
    ||||| |||||| ||| ||| | | |||||||||||  |||| |||||||| |||||| |||||||||| | ||  ||||||||| ||||||  ||||||    
T  21754336 ttgttgaaatttggctttgcaatagtgctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatagcgatttgtctaaattt 21754237  T
Q  420 cgctac 425  Q
    ||||||    
T  21754236 cgctac 21754231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 35991131 - 35991206
Alignment:
Q  193 aagattggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaa 268  Q
    |||||||| ||||||||||| ||||||   ||||| ||||||||||||||||| ||||| || || || |||||||    
T  35991131 aagattggagaagcaactgcccttgaagttagagctactggaattccatatgtgtttgctccatgtatcgcggtaa 35991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 23790383 - 23790449
Alignment:
Q  319 tttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatag 385  Q
    |||| ||| ||| |||||||||||| |||||||||||| |||| ||||||||| | ||| |||||||    
T  23790383 tttgatcacattccgctatgctacagtgctatagcgctgctatttgacaacacctagtactaaatag 23790449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 51616343 - 51616453
Alignment:
Q  308 gaaaataacaatttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaat 407  Q
    |||||||||  | |||||||||| ||||||| |||| ||| ||||| |  |||| |||||||||| |||||||||||| || | |   ||||||| || |    
T  51616343 gaaaataacggtctgttcaaattccgctatgttacagtgcaatagcaccgctatttgacaacactctgtattaaatagcgtatcgtggaacaataccagt 51616442  T
Q  408 ttgttcaaatt 418  Q
    |||||||||||    
T  51616443 ttgttcaaatt 51616453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 2990948 - 2991045
Alignment:
Q  323 ttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatttc 420  Q
    |||||||| |||||||| ||| || ||||| || ||||| |||||||| |||||| ||||||| || | |   ||||| || ||||||||||||||||    
T  2990948 ttcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatttc 2991045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 46937669 - 46937564
Alignment:
Q  319 tttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt 418  Q
    |||||||||||| |||||||| ||| || |||||||| ||||| | |||| | |||||| ||||||| |  | ||  |||||||||| ||||||||||||    
T  46937669 tttgttcaaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaatt 46937570  T
Q  419 tcgcta 424  Q
     |||||    
T  46937569 ccgcta 46937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 4801791 - 4801728
Alignment:
Q  14 aggacacattcaagaatcaaattaactaacaaaatataaatttgaggatcaaactgactaatga 77  Q
    |||||||||||||  |||||| |||||||||||| ||| |||  |||||||||| |||||||||    
T  4801791 aggacacattcaaagatcaaactaactaacaaaaaatacattcaaggatcaaaccgactaatga 4801728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 15956933 - 15956878
Alignment:
Q  363 tgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt 418  Q
    ||||||||||||||| ||||||| || ||||  ||||||| |||||||||||||||    
T  15956933 tgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 44853638 - 44853529
Alignment:
Q  319 tttgttcaaatttcgctatgctacaatgctatagc---gctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaa 415  Q
    ||||||||||||  |||||| | ||||||||||||   |||||||  ||| |||||| |||| ||||||| || | |   ||||||| ||||||||||||    
T  44853638 tttgttcaaattctgctatgatgcaatgctatagcactgctactagttgataacactctgtactaaatagggtattgtggaacaatatcaatttgttcaa 44853539  T
Q  416 atttcgctac 425  Q
    ||||||||||    
T  44853538 atttcgctac 44853529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 7347739 - 7347693
Alignment:
Q  372 tttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaatt 418  Q
    |||||| |||||||||| | ||| |||||||||||||||||||||||    
T  7347739 tttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaatt 7347693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 416
Target Start/End: Complemental strand, 32868370 - 32868272
Alignment:
Q  318 atttgttcaaatttcgctatgctacaatgctatagcgctactatgtgacaacactttgtattaaatagtgtgtggcacaacaatagcaatttgttcaaa 416  Q
    ||||||||||||| |||||||||| | || || |||||  | || |||||||| |||| | |||||||| | | ||| ||||||||| |||||||||||    
T  32868370 atttgttcaaattccgctatgctagagtgttagagcgccgccatttgacaacaatttgcactaaatagtatattgcagaacaatagcgatttgttcaaa 32868272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 34786629 - 34786664
Alignment:
Q  319 tttgttcaaatttcgctatgctacaatgctatagcg 354  Q
    |||||||||||||| |||||||||||||||||||||    
T  34786629 tttgttcaaatttcactatgctacaatgctatagcg 34786664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 11246904 - 11246832
Alignment:
Q  196 attggtgaagcaactgctcttgaatccagagcaactggaattccatatgtctttgcgccttgcattgcggtaa 268  Q
    |||||||  |||||||||||||||  ||||||||| || ||||| ||||  ||||| || |||||||||||||    
T  11246904 attggtgctgcaactgctcttgaaatcagagcaacagggattccttatgcttttgctccatgcattgcggtaa 11246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 4473 - 4507
Alignment:
Q  317 aatttgttcaaatttcgctatgctacaatgctata 351  Q
    ||||||||||||||| |||||||||||||||||||    
T  4473 aatttgttcaaattttgctatgctacaatgctata 4507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University