View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6459_low_9 (Length: 454)
Name: NF6459_low_9
Description: NF6459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6459_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 5 - 440
Target Start/End: Original strand, 46847414 - 46847851
Alignment:
| Q |
5 |
gaggagcagagacaagggaggtgagtgaggacatagacaaatgaactagtacaacgatgttgtcaatacaaaataaaagtgaaaaatggtttctcgtaag |
104 |
Q |
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| T |
46847414 |
gaggagaagagacaagggaggtgagtgaggagatagacaaatgaactagtacaatgatgttgtcaatacaaaataaaagtgaaaaatggtttctcgtatg |
46847513 |
T |
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| Q |
105 |
acaagggtgaagcacaagcacaaacaaccacactcagaaaataagagtaattacgaagagtaattaaaattaaggtatatacagtccccgcaaaatatta |
204 |
Q |
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| T |
46847514 |
acaagggtgaagcacaagcacaaacaaccacactcagaaaataagagtaattacgaagagtaattaaaattggggtatatacagtccccgcaaaatatta |
46847613 |
T |
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| Q |
205 |
taaaaataaaacctatatttttaattgaaattctattatatctaatcgggttggctgaatttcaaattactaacccaacatttgacctattgattataag |
304 |
Q |
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| T |
46847614 |
taaaaataaaacctatatttttaattgaaattctattatatctaatcgggttggctgaatttcaaattactaacccaacatttaacctattgattataag |
46847713 |
T |
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| Q |
305 |
ttgac-nnnnnnnngtgttaccggattaataca-ggaagaagatgcaacaacttataactcgttgataatataatagtaaaacaaacactaaattgtcta |
402 |
Q |
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| T |
46847714 |
ttgacaaaaaaaaagtgttaccggattaatacatgaaagaagatgcaacaacttataactcgttgataatataatagtaaaataaacactaaattgtcta |
46847813 |
T |
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| Q |
403 |
ctaagtgcaactcaagtggttgaatttatatattttgt |
440 |
Q |
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| T |
46847814 |
ctaagtgcaactcaagtggttgaatttatacattttgt |
46847851 |
T |
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