View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6460_high_1 (Length: 392)
Name: NF6460_high_1
Description: NF6460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6460_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 135 - 377
Target Start/End: Original strand, 45209467 - 45209709
Alignment:
| Q |
135 |
cagaaagcttataaagttataatctatgtttagttaataaatgtttataacaaccaatatttatttgacacgacccctcacatttataaatagtaggtca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45209467 |
cagaaagcttataaagttataatctatgtttagttaataaatgtttataacaaccaatatttatttgacatgacccctcacatttataaatagtaggtca |
45209566 |
T |
|
| Q |
235 |
taatgattttgacatacctgtggaacgtttttcatcacaagtttgccaaccacatttactatacctgttgcataaatcaaacatcaatagtatatctata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209567 |
taatgattttgacatacctgtggaacgtttttcatcacaagtttgccaaccacatttactatacctgttgcataaatcaaacatcaatagtatatctata |
45209666 |
T |
|
| Q |
335 |
gaactcagctactgtcaatatctctacacatgaaaaagcaaac |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209667 |
gaactcagctactgtcaatatctctacacatgaaaaagcaaac |
45209709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 45245528 - 45245873
Alignment:
| Q |
7 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctacatttagatagaggagaaagttaacatgcaact |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
45245528 |
aatactcaccactaactcccttcacttgtgggtgcaatgctacatagcatgttgtggctgccccctacatttagatag--gagaaagttaacttgcaact |
45245625 |
T |
|
| Q |
107 |
aattactatgctaagaaaagtgaaatatcagaaagcttataaa--gttataatctat-gtttagttaataaatgtttataacaaccaatatttatttgac |
203 |
Q |
| |
|
||||||| || || ||||||||||||||||||| ||| ||| || | | ||| | | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45245626 |
gattactaagcaaaaaaaagtgaaatatcagaaatcttctaatctgtgtttctttattggtcccttaataaacgtttataacaaccaatatttatttgac |
45245725 |
T |
|
| Q |
204 |
acgacccctcacatttataaatagtaggtcataatgattttgacatacctgtggaacgtttttcatcacaagtttgccaaccacatttactatacctgtt |
303 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||| ||||||||||| |||| ||||||||||||||||| |||| ||| | || |||||||||| |
|
|
| T |
45245726 |
acgaccc-tcacatttataaatcataggtcatactgattatgacatacctgctgaacatttttcatcacaagtttcccaatcacctgtattatacctgtt |
45245824 |
T |
|
| Q |
304 |
gcataaatcaaacatcaatag-tatatctatagaactcagctactgtca |
351 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| |||||||||||||||| |
|
|
| T |
45245825 |
gcataaatcaaacataagtagcaatatctataaaactcagctactgtca |
45245873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 45209365 - 45209465
Alignment:
| Q |
7 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctacatttagatagaggagaaagttaacatgcaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45209365 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctacatttagatagaggagaaagttaacatgcaact |
45209464 |
T |
|
| Q |
107 |
a |
107 |
Q |
| |
|
| |
|
|
| T |
45209465 |
a |
45209465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 351
Target Start/End: Original strand, 45229770 - 45229953
Alignment:
| Q |
168 |
ttaataaatgtttataacaaccaatatttatttgacacgacccctcacatttataaatagtaggtcataatgattttgacatacctgtggaacgtttttc |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || || || ||||||||||| ||||||||| ||||| ||| ||||||| |||| |||||| |
|
|
| T |
45229770 |
ttaataaatgtttatagcaaccaatatttatttgaattgatcc-tcgcatttataaatcataggtcatactgattatgaaatacctgctgaacatttttc |
45229868 |
T |
|
| Q |
268 |
atcacaagtttgccaaccacatttactatacctgttgcataaatcaaacatcaatagt-atatctatagaactcagctactgtca |
351 |
Q |
| |
|
||||||||||| |||| ||| |||| ||||||||||||||||||||||||| | |||| ||||| ||| |||| || |||||||| |
|
|
| T |
45229869 |
atcacaagtttcccaatcacctttattatacctgttgcataaatcaaacataagtagtaatatccataaaactgagatactgtca |
45229953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 45228169 - 45228261
Alignment:
| Q |
7 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctacatttagatagaggagaaagttaacatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
45228169 |
aatattcaccactaactcccttcacttgcgggtgcaatgctacatagcatgtagtggctgccccctacatttagat--aagagaaagttaacatg |
45228261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 45202992 - 45203062
Alignment:
| Q |
7 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctacatt |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||| |
|
|
| T |
45202992 |
aatattcaccactaactcccttcacttgtgggtgcaatgctacatagcatgttgttgctgctccctgcatt |
45203062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 19274461 - 19274521
Alignment:
| Q |
15 |
ccactaactcccttcacttgtgggtgcaatgctacatagcaggttgtggctgccccctaca |
75 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
19274461 |
ccactaatacccttcacttttgggttcaatgctacatagcatgttgttgctgctccctaca |
19274521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University