View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6460_high_2 (Length: 381)
Name: NF6460_high_2
Description: NF6460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6460_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 1726734 - 1727085
Alignment:
| Q |
10 |
attattctaacatgtagcgtgtgtttaccaagtttagtaggtggtaactattcggttcaagtaaagtaaatagtaaaaaattcaaatcgtgactctatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726734 |
attattctaacatgtagcgtgtgtttaccaagtttagtaggtggtaactattcggttcaaataaagtaaatagtaaaaaattcaaatcgtgactctatca |
1726833 |
T |
|
| Q |
110 |
aatagaattttggcaggcactatctagtggagattagatctctcaagttgattaaaacttattcaaatcgcgactctttcaaataatggtgatacttagc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1726834 |
aatagaattttggcaggcactatctagtggagattagatctctcaagttgattaaaacttattcaaatcgtgactctttcaaataatggtgatacttagc |
1726933 |
T |
|
| Q |
210 |
acacatgagtaagagatttaatttggttaattatgttttgcgatgagctcgtgacaatattttttaggttaaatagctgctggagatcaaactatcaagt |
309 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1726934 |
acacatgagtaagagatttaatttgattaattatgttttgcgatgagctcgtgacaatattttttaggttaaatagctgctggagatcaaactatcaagt |
1727033 |
T |
|
| Q |
310 |
gaatgaataagagatttaagtttctcattataatgttttgagatctatttaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1727034 |
gaatgaataagagatttaagtttctcattataatgttttgagatctatttaa |
1727085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University