View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6460_low_4 (Length: 234)
Name: NF6460_low_4
Description: NF6460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6460_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43167799 - 43167580
Alignment:
| Q |
1 |
cactatcatcaagctactttcctcgtcttgatagtcattttccataacgttatcatcataaattggttctgtaatctctgattctggtatgtaaaattcg |
100 |
Q |
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|||||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43167799 |
cactatcatcaaactattttcttcttcttgatattcattttccataacgttatcatcataaattggttctgtaatctctgattctggtatgtaaaattcg |
43167700 |
T |
|
| Q |
101 |
aaccggttactcttctcgctgtcgtggacatgttcaatgttttgatgagtggttgatgaagagggattgattaaacttgaatataacgctataaaagcaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43167699 |
aaccggttactcttctcgctgtcgtggacatgttcaatgttttgatgagtggttgatgaagagggattgattaaacttgaatataatgctataaaagcaa |
43167600 |
T |
|
| Q |
201 |
gaatgatattgcaaagaagg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
43167599 |
gaatgatattgcaaagaagg |
43167580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 43155072 - 43155253
Alignment:
| Q |
39 |
tttccataacgttatcatcataaattggttctgtaatctctgattctggtatgtaaaattcgaaccggttactcttctcgctgtcgtggacatgttcaat |
138 |
Q |
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||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||| |
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| T |
43155072 |
tttccgtaacgttatcaccaccaattggttctgtaatctctgattctgatatgtaaaattcaaaccggttactcttctcgctgtcgaggacatgttgaat |
43155171 |
T |
|
| Q |
139 |
gttttgatgagtggttgatgaagagggattgattaaacttgaatataacgctataaaagcaagaatgatattgcaaagaagg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||| |
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| T |
43155172 |
gttttgatgagtggttgatgaagagggattgattaaatttgaatataatgctataaaagcaagaagtgtattgcagagaagg |
43155253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 39843141 - 39843110
Alignment:
| Q |
137 |
atgttttgatgagtggttgatgaagagggatt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
39843141 |
atgttttgatgagtggttgatgaagagggatt |
39843110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 47706253 - 47706284
Alignment:
| Q |
137 |
atgttttgatgagtggttgatgaagagggatt |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
47706253 |
atgttttgatgagtggttgatgaagagggatt |
47706284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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