View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6461_high_2 (Length: 410)
Name: NF6461_high_2
Description: NF6461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6461_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 5013280 - 5013678
Alignment:
| Q |
1 |
tctataatctagtgccctatgctgtatggccnnnnnnnnngttaaaatttattcttcattgtttttattaagaaattatcggtttattcagccgtatcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5013280 |
tctataatctagtgccctatgctgtatggcctttttttt-gttaaaatttattcttcattgtttttattaagaaattatcggtttattcagccgtatcgg |
5013378 |
T |
|
| Q |
101 |
attacaagttagccgtattcaacacgtatcggtcannnnnnnaaaaatgaataaatatcaattgtccgatacttatttgatacgcatataggaacgtatc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5013379 |
attacaagttagccgtatttaacacgtatcaatcatttttttttaaatgaataaatattaattgtccgatacttatctgatacgcatataggaacgtatc |
5013478 |
T |
|
| Q |
201 |
gaggcgtatcaatgtcggatacgtatcgacacgatgcttcttcatttttagagtattgaggcttgacatagtaccatacattaagctaaggagtactgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5013479 |
gaggcgtatcaatgtcggatacgtatcgacacgatgcttcttcatttttagagtattgaggcttcacatggtaccatacgttaagctaaggagtactgca |
5013578 |
T |
|
| Q |
301 |
cagaattagaggttatactttttagggaagaatatattggcatttaaagtgtaatatcgattacatcaagccatgatcattgccaaggacgaattgatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5013579 |
cagaattagaggttatactttttagggaagaatatattggcatttaaagtgtaatatcgattacatcaagccatgatcattgccaaggacgaattgatga |
5013678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 11382534 - 11382427
Alignment:
| Q |
150 |
aataaatatcaattgtccgatacttatttgatacgcatataggaacgtatcgaggcgtatcaatgtcggatacgtatc-gacacgatgcttcttcatttt |
248 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||| | ||| || | |||||| |||||||| || |||||||||| || || ||||| |||| |||||| |
|
|
| T |
11382534 |
aataaatattaattgtccgatacttttctgatacccgtatcgggatgtatcggggcgtatcgatatcggatacgtgtctgatacgatacttcaccatttt |
11382435 |
T |
|
| Q |
249 |
tagagtat |
256 |
Q |
| |
|
| |||||| |
|
|
| T |
11382434 |
tggagtat |
11382427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 19928173 - 19928211
Alignment:
| Q |
97 |
tcggattacaagttagccgtattcaacacgtatcggtca |
135 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
19928173 |
tcggagtacaagttagtcgtattcaacacgtatcggtca |
19928211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 30947576 - 30947516
Alignment:
| Q |
150 |
aataaatatcaattgtccgatacttatttgatacgcatataggaacgtatcgaggcgtatc |
210 |
Q |
| |
|
||||||||| ||||| ||||||||| || ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
30947576 |
aataaatattaattgcccgatactttttcgatacccgtatcggaacgtatcggggcgtatc |
30947516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University