View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6461_high_3 (Length: 270)
Name: NF6461_high_3
Description: NF6461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6461_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 3702463 - 3702707
Alignment:
| Q |
19 |
ttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggt |
118 |
Q |
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| T |
3702463 |
ttatactcaacaaaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggt |
3702562 |
T |
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| Q |
119 |
aggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaag |
218 |
Q |
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| T |
3702563 |
aggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaag |
3702662 |
T |
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| Q |
219 |
gcgagaaaatggatcctgaacttatggttgatattgttgatgatg |
263 |
Q |
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| T |
3702663 |
gtgagaaaatggatcctgaacttatggttgatattgttgatgatg |
3702707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 3698775 - 3699019
Alignment:
| Q |
19 |
ttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggt |
118 |
Q |
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| T |
3698775 |
ttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggt |
3698874 |
T |
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| Q |
119 |
aggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaag |
218 |
Q |
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| T |
3698875 |
aggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtgagatgaaag |
3698974 |
T |
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| Q |
219 |
gcgagaaaatggatcctgaacttatggttgatattgttgatgatg |
263 |
Q |
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| T |
3698975 |
gtgagaaaatggatcctgaacttatggttgatattgttgatgatg |
3699019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 17602710 - 17602894
Alignment:
| Q |
29 |
caaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtggtctt |
128 |
Q |
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| T |
17602710 |
caaaatctgacgtggacacaacatggatttaatgagagaattggtgaaattgagaaaattggtaaagatgcttttagtaggttgaaaggtaggtgggggt |
17602809 |
T |
|
| Q |
129 |
gtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagat |
213 |
Q |
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| T |
17602810 |
gtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttcataatatttgtgagat |
17602894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 52250869 - 52250765
Alignment:
| Q |
111 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
210 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
52250869 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
52250770 |
T |
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| Q |
211 |
gatga |
215 |
Q |
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|||| |
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| T |
52250769 |
aatga |
52250765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 52262535 - 52262407
Alignment:
| Q |
87 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
185 |
Q |
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||||||||||||||||||| || ||||||| |||||||| |||||||| || ||||| || ||||| || | ||||||||| || || | ||||| |
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| T |
52262535 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
52262437 |
T |
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| Q |
186 |
gttgtgttttgcataacatttgtgagatga |
215 |
Q |
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| T |
52262436 |
gttgtgttttgcataatatttgtgagatga |
52262407 |
T |
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