View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6461_low_1 (Length: 703)

Name: NF6461_low_1
Description: NF6461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6461_low_1
NF6461_low_1
[»] chr5 (1 HSPs)
chr5 (19-686)||(2944238-2944906)


Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 19 - 686
Target Start/End: Original strand, 2944238 - 2944906
Alignment:
Q  19 aagcgtggtctttgcataaaaattgctgaagattaggaaaaaacactgaagagaatgaacaatggcacaacagttgaaccagataatgtaactatcgagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2944238 aagcgtggtctttgcataaaaattgctgaagattaggaaaaaacactgaagagaatgaacaatggcacaacagttgaaccagatagtgtaactatcgagg 2944337  T
Q  119 cattaaacggtctaatagaggaaggcataagatagctcctaaaattgtttaacaagaatgtgagctctaagaaagtgaatgagaagcaccttaatcccaa 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  2944338 cattaaacgatctaatagaggaaggcataagatagctcctaaaattgtttaacaagaatgtgagctctaagaaagtgaatgagaagcactttaatcccta 2944437  T
Q  219 catatatgaacaagggggtataccaaactgtgataactatctcttgaggaatactattctgttttaattgagtggagattacacaacagttccgtagtat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2944438 catatatgaacaagggggtataccaaactgtgataactatctcttgaggaatactattgtgttttaattgagtggagattacacaacagttccgtagtat 2944537  T
Q  319 cgctttactaatgatagcacagcagttctttcttgtgcagtatttctataattttcgtaagatactcttctgatatttaattaaaaaagtatgctagtta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2944538 cgctttactaatgatagcacagcagttctttcttgtgcagtatttctataattttcgtaagatactcttctgatatttaattaaaaaaatatgctagtta 2944637  T
Q  419 tagatgatgtagtgaagtaagttacagcaac-ttaatgaaaaatcatatcattatgtggatcatcaaaccgttgattattgcaggggatgccttttcaac 517  Q
    ||||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944638 tagatgatgtagtgaagtaagttacggcaactttaataacaaatcatatcattatgtggatcatcaaaccgttgattattgcaggggatgccttttcaac 2944737  T
Q  518 ccccagagacaggtataaatggtttctttgattctattgaaagcatgtggaataaactatggacaggctttatagaatttattactggaaaaaattgcag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944738 ccccagagacaggtataaatggtttctttgattctattgaaagcatgtggaataaactatggacaggctttatagaatttattactggaaaaaattgcag 2944837  T
Q  618 gtaacattttctactattatacaatgtgaattctagaatgtacgtggtagtatgggtttctcacatttt 686  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944838 gtaacattttctactattatacaatgtgaattctagaatgtacgtggtagtatgggtttctcacatttt 2944906  T

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