View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6461_low_4 (Length: 265)
Name: NF6461_low_4
Description: NF6461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6461_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2294133 - 2293874
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2294133 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgagga |
2294034 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2294033 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaa |
2293934 |
T |
|
| Q |
201 |
atttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2293933 |
atttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
2293874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2310464 - 2310205
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2310464 |
cggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacga |
2310365 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2310364 |
tccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaa |
2310265 |
T |
|
| Q |
201 |
atttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2310264 |
atttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtt |
2310205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2303746 - 2303487
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
2303746 |
cggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgagga |
2303647 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
2303646 |
tcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaa |
2303547 |
T |
|
| Q |
201 |
atttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
2303546 |
aatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtt |
2303487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2321448 - 2321188
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
2321448 |
cggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgagga |
2321349 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| || |
|
|
| T |
2321348 |
tcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaa |
2321249 |
T |
|
| Q |
201 |
atttcccc-ggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
| | |||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2321248 |
aatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtt |
2321188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2327301 - 2327042
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2327301 |
cggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgagga |
2327202 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
|||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | |||||||||||| || |||| ||||| |||||| || |
|
|
| T |
2327201 |
tccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaa |
2327102 |
T |
|
| Q |
201 |
atttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2327101 |
aatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
2327042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 2331015 - 2330757
Alignment:
| Q |
2 |
ggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | |
|
|
| T |
2331015 |
ggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggt |
2330916 |
T |
|
| Q |
102 |
ccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaa |
201 |
Q |
| |
|
||||| ||||||| || | || |||||||||||||| | |||||||||||||||||| | ||||||||||||||| |||| || || |||||| || |
|
|
| T |
2330915 |
ccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaa |
2330816 |
T |
|
| Q |
202 |
tttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtt |
260 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2330815 |
atgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtt |
2330757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 2351321 - 2351070
Alignment:
| Q |
2 |
ggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggat |
101 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2351321 |
ggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggat |
2351222 |
T |
|
| Q |
102 |
ccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaa |
201 |
Q |
| |
|
|| || ||||||| |||| || ||||| |||||||| |||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||| | |
|
|
| T |
2351221 |
cccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacatt |
2351122 |
T |
|
| Q |
202 |
tttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaatac |
253 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
2351121 |
atgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatac |
2351070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41127328 - 41127083
Alignment:
| Q |
1 |
cggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgagga |
100 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| ||||||| |||||||||||||||||||||||| |||||||||||||| || |||||||||| ||| |
|
|
| T |
41127328 |
cggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacactaggg |
41127229 |
T |
|
| Q |
101 |
tccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaa |
200 |
Q |
| |
|
||| | | || || |||| || ||||||||| | | |||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||| || |
|
|
| T |
41127228 |
tccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaa |
41127129 |
T |
|
| Q |
201 |
atttccccggtggatgacgcctcaacccttccaaaaccacacactt |
246 |
Q |
| |
|
| | ||||||||| |||| ||||| ||||||||||| ||||||||| |
|
|
| T |
41127128 |
agtgccccggtgggtgacacctcagcccttccaaaatcacacactt |
41127083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 26506855 - 26506746
Alignment:
| Q |
83 |
tcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca |
182 |
Q |
| |
|
||||||||||||| |||||| || | | ||| |||| || ||||| || ||||| |||||||||||||| ||||||| |||| ||||||||| ||| |
|
|
| T |
26506855 |
tcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtca |
26506756 |
T |
|
| Q |
183 |
ccgcatgtgg |
192 |
Q |
| |
|
| |||||||| |
|
|
| T |
26506755 |
ctgcatgtgg |
26506746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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